Part of scaffold_1073 (Scaffold)

For more information consult the page for scaffold_1073 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SPOCD1 ENSTTRG00000013314 (Bottlenosed dolphin)

Gene Details

SPOC domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012633, Bottlenosed dolphin)

Protein Percentage 89.34%
cDNA percentage 93.1%
Ka/Ks Ratio 0.60433 (Ka = 0.0639, Ks = 0.1058)

SPOCD1 ENSBTAG00000015715 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000048331, Cow)

Protein Percentage 79.13%
cDNA percentage 88.21%
Ka/Ks Ratio 0.57693 (Ka = 0.1127, Ks = 0.1953)

SPOCD1  (Minke Whale)

Gene Details

SPOC domain containing 1

External Links

Gene match (Identifier: BACU003294, Minke Whale)

Protein Percentage 95.96%
cDNA percentage 97.41%
Ka/Ks Ratio 0.72287 (Ka = 0.0244, Ks = 0.0338)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2016 bp    Location:368663..358742   Strand:-
>bmy_14979
TGGCAGGTTGGTTCTGGGGCAGTCATCCACCTCCTGGGGGCCATCGGCTACGGCCAGGCAGGGGGACTGCTGCCTCCAAAGCTGGAGGTTCTGGAGGACATGATGGAGGTCAACTCAGCCTCACCTGCCCAGAGGCCCAGAAGGAAGGAAAGGCCCATGGCCCAGGGCCCCGCAGGGTGCCAGTGTGGCCCAGTGGAGGCTGAAGAGGAGGAGCCTGGTGAGCAAGCGCGGGGAGAGGACTCAGCTCAGCTTCAGCCCCAACAGGAGAAGCTCCCCTTGGATACCGGGGTACGGGGCACTGTGGTCCGTGCCATGCAGGAGGCGCTGTGGAGTCGCCTTCAGGAGCGCCCAGACCTGGTGCTGAGTGAGGAGGCCGTGGAGGGCATCGCTGCTGGCATCGAGGCAGCCCTCTTCGACCTGACACAAGCCACCAACGGCCGCTACAAGAACAAGTACCGCAGCCTGCTGTTCAACCTGCGGGACCCCAGGAACCCGGACCTGTTTCTCAAAGTGGTTCACGGAGACGTCAGCCCCCACGGCCTGGTGCGGATGAGCTCGGTCCAGCTGGCCCCCCAAGAGCTGGCCCGCTGGCGGGACCAGGAGGAGAAGAGGGGACCCATGGTGTCCATAGACGGCGACCCACTGGCCCTGCCTGCCACGTCGAAGGGCACCACGGAGCAGCACGAGGACACCACAGAGCAGCACGAGCACTACTTCCTAGACTCCAGCTGCCGCATCTGCATGGACTGGAAGCCCTTGTGTGAGCAGCCAGCCTCCTTCATAGCCACCAGGAGGATGGGGGATGATGCTTTCCAGAGAGCCCCAAGCCTAGTCCCTATGTCCTCTCCAGAGATGCCCCAAACCAAGGAGAAGCCTCCCACGGAGCCCAAGGACAGGCTCCAGATGCCTGCTGGGTCCACAAAAGCCCTGCCCAGCCAGCCGCCCTGGGAGGGGTCTCTGGACATGTTCTCCATTAAGCGGTTCCAGGTCAAGGCCCAGCTGGTCTCGGGGCACAGCTTTCGGCTCATCCGGGCCCTGCCGCAGGTGATCCGCTCCGCAGGCTGCATCCCCCCCAGTGCTGTCTGGGACTTTCTGGCCAGCATCTGCCCAGCCGAGGCCAAGGACGTCTGCGTGGTCAGACTGTGCCCACAGGGCTCTCAGGACACCCAGAATTGCCACCTGCTCTATTCCTACCTCAATGACAAGCAGCGCCATGGCCTGGCAGCTGTGGAACAGGTGGGGGTGGTCCTGCTGCCCCTGCCTGCCTTCCAGCCCCTGCCCTCCAGGCTGCGCCCTCTTGGAGGCCCAGGCCTGGAAGCCACTCACTCAAGCCTGTTGCTGGCGGTGCTGCTCCCCAAGGCAGGGCTTCTGGACACAGCAGAGTCCAGACCCTTGGGGGGGAAGGTTCGCAAAATGCTCTCCTTCAACAGAAAAGTGGAGATGAGATACTACCAGCCAGAGGCCAGGGGGCCAGACGTAGCCCTGAAGGGCTCCCCTCCCCCGGTGGGTGCCCTGCAGCAGGGCCAGGGCAAAGGCAACCTGGCCCCAAGGGGAATCTGTGCTTGGCAGAGGCCTTCCAGAGGCAGGGGGAGACTGTGGGGAGAGCCTGAGACCTGGCAGCATCCTGGGCGAGGGCAACGGCCTCCAAACCCAGGCTGGTACCAGTCCTGGCATCCCTATTCAGCTTCACCAGCTGGCCATGACCAGCACCTCCACAGGGCTTCCTGTCCCCACCAAGCCCTGCTCCAGCATCTCAAATCCCTGGTGGCCATGAGCCACCGGCTCCAAGCCTCACTGAGGTCCCTAGGCCAGGAGCAACTTCCCCGACCTCCTGCCCAGCCTCCTGCAGCCCCTGGGATTCTTGGCCTCCTCTGCCAGTCCCCTGCAGCTCCAGAGCCCCCTGGCCCAGCCCTTGACTCCTCTTTGGAGTCTACAGATGGAGCTGGCTCTGAGTGTCCCCTTCCTGGAGAGACCTTACCCTCATTACCCACCAAAAGAGGGACTTTAATTCCCTAA

Related Sequences

bmy_14979T0 Protein

Length: 672 aa      View alignments
>bmy_14979T0
WQVGSGAVIHLLGAIGYGQAGGLLPPKLEVLEDMMEVNSASPAQRPRRKERPMAQGPAGCQCGPVEAEEEEPGEQARGEDSAQLQPQQEKLPLDTGVRGTVVRAMQEALWSRLQERPDLVLSEEAVEGIAAGIEAALFDLTQATNGRYKNKYRSLLFNLRDPRNPDLFLKVVHGDVSPHGLVRMSSVQLAPQELARWRDQEEKRGPMVSIDGDPLALPATSKGTTEQHEDTTEQHEHYFLDSSCRICMDWKPLCEQPASFIATRRMGDDAFQRAPSLVPMSSPEMPQTKEKPPTEPKDRLQMPAGSTKALPSQPPWEGSLDMFSIKRFQVKAQLVSGHSFRLIRALPQVIRSAGCIPPSAVWDFLASICPAEAKDVCVVRLCPQGSQDTQNCHLLYSYLNDKQRHGLAAVEQVGVVLLPLPAFQPLPSRLRPLGGPGLEATHSSLLLAVLLPKAGLLDTAESRPLGGKVRKMLSFNRKVEMRYYQPEARGPDVALKGSPPPVGALQQGQGKGNLAPRGICAWQRPSRGRGRLWGEPETWQHPGRGQRPPNPGWYQSWHPYSASPAGHDQHLHRASCPHQALLQHLKSLVAMSHRLQASLRSLGQEQLPRPPAQPPAAPGILGLLCQSPAAPEPPGPALDSSLESTDGAGSECPLPGETLPSLPTKRGTLIP*