Sequence detailsbmy_15129 (Coding sequence)

Part of scaffold_1110 (SequenceType object (1))

For more information consult the page for scaffold_1110 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HOPXENSTTRG00000012653 (Bottlenosed dolphin)

Gene Details

HOP homeobox

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012004, Bottlenosed dolphin)

Protein Percentage 83.33%
cDNA percentage 85.86%
Ka/Ks Ratio 0.13945 (Ka = 0.0988, Ks = 0.7089)

HOPENSBTAG00000002333 (Cow)

Gene Details

Homeodomain-only protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003013, Cow)

Protein Percentage 95.89%
cDNA percentage 95.43%
Ka/Ks Ratio 0.06132 (Ka = 0.0164, Ks = 0.2678)

Additional orthologs identified in other species via the OPTIC pipeline.

HOPX (Human)   Hopx (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 393 bp    Location:270396..277753   Strand:+
Raw sequence 
>bmy_15129
GAGCAGCCTGCAGCGCCGGGGACCCGCGCGCCGTGCGACCTCGGGCGGGGACAGCCCCGGGGGCTGAAGGTGCCCGGCAGCGCCCCGGATCGCCGTTCCTCCCTGCGTCCCGCCCGCCCGGGGCCTCGCTCACCCCGCCGCTTCTCCCTCTCCCACAGCCGTGTCTGGACCATGTCTGCGGAGACCGCGAGCGGCCCCACTGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAGGGTCAACAAGCACCCGGACCCCACCACGCTGTGCCTGATCGCGGCCGAGGCCGGCCTTTCCGAGGAGGAGACCCAGAAATGGTTCAAGCAGCGCCTGGCCCAGTGGCGGCTATCAGAAGGCCTACCCTCAGAGTGCAGATCCGTCACAGACTGA

Related Sequences

bmy_15129T0 SequenceType object (3)

Length: 131 aa      View alignments
>bmy_15129T0
EQPAAPGTRAPCDLGRGQPRGLKVPGSAPDRRSSLRPARPGPRSPRRFSLSHSRVWTMSAETASGPTEDQVEILEYNFNRVNKHPDPTTLCLIAAEAGLSEEETQKWFKQRLAQWRLSEGLPSECRSVTD*