Part of scaffold_1121 (Scaffold)

For more information consult the page for scaffold_1121 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF1B ENSTTRG00000017200 (Bottlenosed dolphin)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016304, Bottlenosed dolphin)

Protein Percentage 90.06%
cDNA percentage 90.49%
Ka/Ks Ratio 0.29878 (Ka = 0.0118, Ks = 0.0395)

TAF1B ENSBTAG00000007543 (Cow)

Gene Details

TATA box-binding protein-associated factor RNA polymerase I subunit B

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000041230, Cow)

Protein Percentage 84.98%
cDNA percentage 89.35%
Ka/Ks Ratio 0.42941 (Ka = 0.0908, Ks = 0.2115)

TAF1B  (Minke Whale)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa

External Links

Gene match (Identifier: BACU016788, Minke Whale)

Protein Percentage 93.29%
cDNA percentage 94.04%
Ka/Ks Ratio 0.51574 (Ka = 0.055, Ks = 0.1066)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 942 bp    Location:91937..108640   Strand:+
>bmy_15213
ATGCTTTGGAGTGATTATGACAACATTGTAACTCCAGTTGGGTTGCAGCTGTATACCAGATTCTTCCATGATTGGCAAGAATCTTGGCCTAACTATGAAGATATCTATAAAAAAATAATTGAAGTTGCTACATTTTTAGATTTGCCACGTTTTCCAGACATAACTGAAGACTGCTATCTTCATCCAAACATCTTGTGTATGAAATACTTGATGGAAGTCAATCTCCCTGATGAAATGCATGATTTAACCTGCCACGTGGTAAAAGTGACTGGAATAGGAGAAGTGGATTTTCTAACATTTGATCCTATAGCTAAAAAGGCAAAAACTGTTAAATATGATGTACAAGCTGTAGCTGTCATTGTAGTGGTATTGAAACTGCTCTTTTTATTGGATGACAATTTAGAATGGTCTTTGTCTAATATTGCTGAGAAATATAATGAAAAGAATGAAGAAGATAAGCCATGGTTTGATTTCAGAAAATGGTACCAAGTTATGAAGAAAGCTATTGACGAAAAAAAACAAAAATGGGAGGAAGCCAGGGCAAAGTATCTATGGAAAAGTGAAAAGCCACTCTACCACTCAGCCATTGACAGATCAGTGTTCAGCTGGACCGAAGAGGGCAGTGATAGAACTTGTTTCCATGGGCATAGCCTCCAGGGAGTCCTGAAGCAGAAAGGCCAGTCACTGATGACCAAGAATTCCCTCTATTGGCTGAGTACTCAGAAATTCTGTAAAAGCTATTGTAAGCATGTGACAACCTACGAAGAATCAAATTTTTCTCTGAGTTATCAGTTTATACTAAATCTCTTCTCCTTCTTGCTAAGAATAAAGACCTCCCTTCTCCATGAAGAAGTGAGCTTAATAGAAAAGAGACTTTTTAAAGCAAAATACAGTACAACAAAAAAGAAATCTTCAAGATCCAGGAAAGTAAGAAAATGTTGA

Related Sequences

bmy_15213T0 Protein

Length: 314 aa      View alignments
>bmy_15213T0
MLWSDYDNIVTPVGLQLYTRFFHDWQESWPNYEDIYKKIIEVATFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHDLTCHVVKVTGIGEVDFLTFDPIAKKAKTVKYDVQAVAVIVVVLKLLFLLDDNLEWSLSNIAEKYNEKNEEDKPWFDFRKWYQVMKKAIDEKKQKWEEARAKYLWKSEKPLYHSAIDRSVFSWTEEGSDRTCFHGHSLQGVLKQKGQSLMTKNSLYWLSTQKFCKSYCKHVTTYEESNFSLSYQFILNLFSFLLRIKTSLLHEEVSLIEKRLFKAKYSTTKKKSSRSRKVRKC*