Sequence detailsbmy_15232 (Coding sequence)

Part of scaffold_1117 (SequenceType object (1))

For more information consult the page for scaffold_1117 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM12ENSTTRG00000010433 (Bottlenosed dolphin)

Gene Details

LSM12 homolog (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009897, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.78%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0122)

LSM12ENSBTAG00000016252 (Cow)

Gene Details

Protein LSM12 homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000021620, Cow)

Protein Percentage 100.0%
cDNA percentage 99.13%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0344)

LSM12 (Minke Whale)

Gene Details

LSM12 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU008436, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.78%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0124)

Additional orthologs identified in other species via the OPTIC pipeline.

LSM12 (Human)   Lsm12 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 477 bp    Location:138432..154750   Strand:+
Raw sequence 
>bmy_15232
TGTCCCTCTTCCAGTGGAAAGCCCAACCACGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAGCTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGCGCTGGTGTCTCCCTAGAGGGCCAGCAGCTCTTCCAGACCATACACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCAAAATAGTAAGTAAAGGAGCCGTTGAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAGCGTTCACAAGCCCAGCAACCACAGAAGGAGGCTGCCCTGTCATCCTGA

Related Sequences

bmy_15232T0 SequenceType object (3)

Length: 159 aa      View alignments
>bmy_15232T0
CPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVSKGAVEKHFRDVESQKILQRSQAQQPQKEAALSS*