Part of scaffold_1122 (Scaffold)

For more information consult the page for scaffold_1122 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LEF1 ENSTTRG00000008109 (Bottlenosed dolphin)

Gene Details

lymphoid enhancer-binding factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007673, Bottlenosed dolphin)

Protein Percentage 57.65%
cDNA percentage 63.41%
Ka/Ks Ratio 0.69719 (Ka = 0.2867, Ks = 0.4112)

LEF1 ENSBTAG00000006844 (Cow)

Gene Details

lymphoid enhancer-binding factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000008991, Cow)

Protein Percentage 84.04%
cDNA percentage 85.88%
Ka/Ks Ratio 0.46731 (Ka = 0.1258, Ks = 0.2693)

LEF1  (Minke Whale)

Gene Details

lymphoid enhancer-binding factor 1

External Links

Gene match (Identifier: BACU014396, Minke Whale)

Protein Percentage 84.23%
cDNA percentage 87.22%
Ka/Ks Ratio 0.65501 (Ka = 0.1266, Ks = 0.1933)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 981 bp    Location:176131..207633   Strand:+
>bmy_15291
ATGATTCAGCTGTCCAGGTCTGGAGATGATTCTCGGGTTGTGCTGGTGCCCAGTGACTGCTATTGTGTGACTTCTGCGGGGAGAGGAGACAGGAGCTGGGCGTCCATATTAACGGCTGTCCTTGTGGTTACTTTGCAGTCAAATAAAGTGCCCGTGGTGCAGCCATCCCACGCCGTCCATCCTCTCACCCCCCTCATCACTTACAGCGACGAGCACTTTTCTCCAGGATCACACCCGTCACACCTCCCATCGGATGTCAGCTCCAAACAAGGCATGTCCAGACATCCTCCAGCTCCCGAGATCCCTACCTTTTATCCCCTGTCTCCGGGGGGTGTTGGACAGATTACCCCACCTCTTGGCTGGCAAGGTCAGCCTGTATATCCCGTCACGGGAGGCTTCAGGCAACCCTACCCATCCTCCCTGTCAGTCGACACTTCCATGTCCAGGTTTTCTCATCATATGATTCCCGGTCCTCCTGGTCCCCACACAACTGGCATCCCACATCCAGCTATCGTAACGCCTCAGGTCAAACAGGAACACCCGCACACTGACAGCGACCTAATGCACGTGAAGCCTCAGCATGAACAGAGAAAGGAGCAGGAGCCGAAAAGACCTCACATTAAGAAGCCTCTGAATGCTTTCATGTTATACATGAAAGAAATGAGAGCGAATGTCGTAGCTGAGTGTACTCTAAAGGAAAGTGCAGCTATCAACCAGATTCTAGGCAGAAGGTGGCATGCCCTCTCTCGCGAAGAGCAGGCTAAATATTATGAATTAGCGCGGAAGGAAAGACAGCTACATATGCAGCTCTATCCAGGCTGGTCTGCAAGAGACAATTATGGTAAGAAAAAGAAGAGGAAGAGAGAGAAACTACAGGAATCTACATCAGAGTACATGAAAATTAAATATTTCTTAATACCTCATGCCATTATTCTACAGTGTAATGTACCATATGGACTGTGTACCCCTCCCCTAAAGTAG

Related Sequences

bmy_15291T0 Protein

Length: 327 aa      View alignments
>bmy_15291T0
MIQLSRSGDDSRVVLVPSDCYCVTSAGRGDRSWASILTAVLVVTLQSNKVPVVQPSHAVHPLTPLITYSDEHFSPGSHPSHLPSDVSSKQGMSRHPPAPEIPTFYPLSPGGVGQITPPLGWQGQPVYPVTGGFRQPYPSSLSVDTSMSRFSHHMIPGPPGPHTTGIPHPAIVTPQVKQEHPHTDSDLMHVKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKLQESTSEYMKIKYFLIPHAIILQCNVPYGLCTPPLK*