Part of scaffold_1143 (Scaffold)

For more information consult the page for scaffold_1143 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTCHD1 ENSTTRG00000010601 (Bottlenosed dolphin)

Gene Details

patched domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010051, Bottlenosed dolphin)

Protein Percentage 79.03%
cDNA percentage 79.36%
Ka/Ks Ratio 0.43637 (Ka = 0.0551, Ks = 0.1263)

PTCHD1 ENSBTAG00000020987 (Cow)

Gene Details

patched domain-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027948, Cow)

Protein Percentage 93.96%
cDNA percentage 92.84%
Ka/Ks Ratio 0.25699 (Ka = 0.0461, Ks = 0.1795)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1791 bp    Location:144018..150067   Strand:+
>bmy_15351
ATGCGAGGAGCGTCCAAAGGCATCAGCGTCCGTGCTGTGGTCTGTGTGCTGGGGAAGGCAGGAGGATCTGGGCCTGAAGAAAAATCTGCCTTACAAAGTCCAAATGGACAAACTTCTAAGATCATCCAACAGCAAGGTCATGGATTATATGGGACTTTTGAAATGTTATCCTCCTGGAGGAAAACTAGAGAAGACCAACACGTTAAAGAGAGAACTGCAGCAGTCTATGCAGACTCCATGCTCTCCTTTTCTCTCACCACTGCCATGTACCTGGTCACCTTTGGCATAGGGGCCAGCCCTTTCACAAACATTGAGGCAGCCAGGATTTTCTGCTGCAATTCCTGTATCGCAATCTTCTTCAACTACCTCTATGTACTCTCGTTTTATGGTTCCAGCCTGGTATTCACTGGCTACATAGAAAACAATTACCAGCATAGTATCTTCTGTAGGAAAGTCCCAAAGCCCGAGGCATTGCAGGAGAAGCCCGCATGGTACAGGTTTCTCCTGACGGCCAGGTTCAGCGAGGACACAACTGACGGCGAGGAAGCGAACACTTACGAGAGTCACCTATTGGTATGTTTCCTCAAACGCTATTACTGTGACTGGATAACCAACACCTATGTCAAGCCTTTTGTAGTTCTCTTTTACCTTATTTATATTTCCTTTGCCTTAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACCTTAGTAACATCGTAGCAACGGCGACACAAACCATTGAGTACACTACTGCCCAGCAAAAGTACTTTAGCAACTACAGTCCGGTGATTGGGTTTTACATATACGAGTCTATAGAATACTGGAACACTAGTGTCCAAGAAGACGTGCTAGAATACACCAAGGGGTTTGTGCGAATATCCTGGTTTGAGAGCTATTTAAATTACCTTCGGAAACTCAATGTGACCACTGGCTTGCCTAAGAAAAATTTCACAGACATGTTGAGAAATTCCTTCCTGAAAGCCCCCCAATTTTCACATTTTCAAGAGGACATCATCTTCTCTAAAAAGTACAATGATGAGGTTGATGTAGTGGCCTCCAGAATGTTTTTGGTGGCCAAGACCATGGAAACGAACAGAGAAGAACTCTATGATCTCCTGGAGACCCTGAGGAGACTTTCCGTCACCTCCAAGGTGAAGTTCATCGTCTTCAATCCGTCCTTCGTGTACATGGATCGATACGCCTCCTCTCTGGGAGCCCCCCTGCACAACTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTGGCAGACTCTCTGATTAATGTCTGGCTCACTCTAACGGTTGTGTCCGTGGAGTTTGGAGTTATAGGTTTCATGACATTATGGAAAGTAGAACTGGACTGCATCTCTGTGCTATGCTTAATTTATGGAATTAACTACACAATTGACAACTGTGCTCCACTATTATCCACCTTTGTTCTGGGCAAGGATTTCACAAGAACGAAGTGGGTAAAAAATGCCCTGGAAGTGCATGGGGTAGCTATTTTACAGAGTTACCTCTGCTATCTTGTTGGTCTGATTCCTCTTGCAGCTGTGCCTTCAAATCTGACCTGTACACTGTTCAGGTGCTTGTTTTTAATAGCATTTGTCACCTTCTTTCACTGCTTTGCCATTTTACCTGTGATACTGACTTTCCTGCCACCCTCTAAGAAAAAAAGGAAAGAGAAGAAAAATCCTGAAAATCGGGAGGAAATTGAGTGTGTAGAAATGGTGGATATCGATAGTACCAGAGTGGTTGACCAAATTACAACAGTGTGA

Related Sequences

bmy_15351T0 Protein

Length: 597 aa      View alignments
>bmy_15351T0
MRGASKGISVRAVVCVLGKAGGSGPEEKSALQSPNGQTSKIIQQQGHGLYGTFEMLSSWRKTREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIFCRKVPKPEALQEKPAWYRFLLTARFSEDTTDGEEANTYESHLLVCFLKRYYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIEYTTAQQKYFSNYSPVIGFYIYESIEYWNTSVQEDVLEYTKGFVRISWFESYLNYLRKLNVTTGLPKKNFTDMLRNSFLKAPQFSHFQEDIIFSKKYNDEVDVVASRMFLVAKTMETNREELYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSCISALFLLFFSAFLVADSLINVWLTLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKDFTRTKWVKNALEVHGVAILQSYLCYLVGLIPLAAVPSNLTCTLFRCLFLIAFVTFFHCFAILPVILTFLPPSKKKRKEKKNPENREEIECVEMVDIDSTRVVDQITTV*