Part of scaffold_1140 (SequenceType object (1))

For more information consult the page for scaffold_1140 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH17ENSTTRG00000000225 (Bottlenosed dolphin)

Gene Details

protocadherin 17

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000209, Bottlenosed dolphin)

Protein Percentage 99.65%
cDNA percentage 98.88%
Ka/Ks Ratio 0.02154 (Ka = 0.0011, Ks = 0.0511)

PCDH17ENSBTAG00000010420 (Cow)

Gene Details

protocadherin-17 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000013751, Cow)

Protein Percentage 98.54%
cDNA percentage 94.72%
Ka/Ks Ratio 0.02213 (Ka = 0.0062, Ks = 0.2824)

PCDH17 (Minke Whale)

Gene Details

protocadherin 17

External Links

Gene match (Identifier: BACU012150, Minke Whale)

Protein Percentage 99.42%
cDNA percentage 98.84%
Ka/Ks Ratio 0.05225 (Ka = 0.0029, Ks = 0.0549)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 3717 bp    Location:305906..198248   Strand:-
>bmy_15366
ATGTACCTTTCCATCTGTTGCTGTTTCCTCCTATGGGCCCCTGCCCTGACGCTCAAAAACCTGAACTACTCCGTGCCGGAGGAGCAAGGGGCCGGCACGGTGATCGGCAACATCGGCAAGGATGCTCGACTGCAGCCGGGGCTTCCGCCCGCAGAGCGAGGCGGCGGTGGCGGCGGGCGAAGCAAGTCGGGTAGCTACCGGGTGCTGGAGAACTCGGCGCCGCACCTGCTGGACGTGGAAGCCGACAGCGGACTCCTCTACACGAAGCAGCGCATCGACCGCGAGTCCCTGTGCCGCCACAACGCCAAGTGCCAGCTGTCCCTCGAGGTGTTTGCCAACGACAAGGAGATCTGCATGATCAAGGTAGAGATCCAGGACATCAACGACAATGCTCCCTCCTTCCCGTCGGACCAGATTGAGATGGACATCTCAGAGAACGCGGCCCCCGGCACCCGCTTCCCCCTTACCAGTGCGCATGACCCCGACGCGGGCGAGAACGGGCTCCGCACCTATCTGCTTACGCGCGACGACCACGGCCTCTTCGCGCTGGACGTCAAGTCCCGCGGCGACGGCACCAAGTTCCCAGAGCTGGTTATCCAGAAGGCACTGGACCGCGAGCAGCAGAACCACCACACGCTCGTGCTGACCGCTCTGGATGGCGGCGAGCCGCCGCGCTCTGCCACCGTGCAGATCAACGTGAAGGTGATTGACTCTAACGACAACAGCCCCGTCTTTGAGGCGCCCTCCTACCTGGTGGAGTTGCCCGAGAACGCCCCGCTGGGCACCGTGGTCATTGATCTGAATGCCACCGACGCCGACGAGGGTCCCAACGGCGAAGTGCTCTACTCTTTCAGCAGCTATGTGCCCGACCGCGTGCGGGAGCTCTTCTCCATCGACCCCAAGACCGGCCTGATCCGTGTCAAGGGCAACCTAGACTATGAGGAGAATGGGATGCTGGAGATCGACGTGCAGGCTCGAGACCTGGGTCCCAACCCCATCCCGGCCCACTGCAAGGTCACTGTCAAGCTCATCGACCGCAACGACAACGCTCCGTCCATTGGTTTTGTCTCCGTGCGCCAGGGGGCGCTGAGCGAGGCCGCTCCGCCCGGCACCGTCATCGCTCTGGTGCGGGTCACTGACCGAGACTCGGGCAAGAACGGGCAGCTGCAGTGCAGGGTCCTGGGCGGAGGAGGGGCGGGCGGCGGCGGCGGCCTGAGCGGGCCGGGAGGTTCCGTGCCCTTCAAACTTGAGGAGAACTACGACAACTTCTACACGGTGGTGACTGACCGCCCGTTGGACCGCGAGACACAGGACGAGTACAACGTGACAATCGTGGCACGGGACGGGGGCTCGCCTCCACTCAACTCCACCAAGTCGTTCGCAGTCAAGATCCTGGACGAGAATGACAACCCGCCTCGCTTCACTAAGGGACTCTATGTGCTGCAGGTGCACGAGAACAACATCCCAGGAGAGTACCTGGGCTCGGTGCTTGCCCAGGACCCTGACCTGGGCCAAAACGGCACAGTGTCCTACTCCATCCTGCCCTCGCACATCGGCGACGTGTCCATCTACACCTATGTGTCTGTGAACCCCACCAACGGGGCCATCTACGCCCTGCGCTCCTTTAACTACGAGCAGACCAAGGCTTTTGAGTTCAAGGTGCTTGCTAAGGACTCCGGGGCGCCCGCGCACTTGGAGAGCAACGCCACTGTGAGGGTGACAGTGCTAGACGTGAATGACAACGCTCCGGTGATCGTGCTGCCAACGCTGCAGAACGACACGGCTGAACTGCAGGTGCCGCGCAACGCCGGGCTAGGCTACCTGGTGAGCACCGTACGCGCCCTTGACAGCGACTTCGGCGAGAGCGGGCGCCTCACCTACGAGATCGTAGACGGTAACGACGACCACCTGTTTGAAATCGATCCATCCAGCGGCGAGATCCGCACGCTGCACCCTTTCTGGGAGGACGTGACGCCGGTGGTGGAGCTGGTAGTGAAGGTGACTGACCACGGCAAGCCCACTCTGTCGGCGGTGGCCAAGCTCATCATCCGCTCGGTGAGCGGCTCTTTGCCCGAGGGGGTTCCCCGGGTGAACGGCGAACAGCGCCACTGGGACATGTCGCTGCCGCTCATAGTGACTCTGAGCACTATCTCCATCATCCTCCTAGCGGCCATGATCACCATCGCCGTTAAGTGCAAGCGCGAGAACAAGGAGATCCGCACTTACAACTGCCGCATCGCAGAGTACAGCCACCCGCAGCTGGGCGGGGGCAAGGGCAAGAAAAAGAAGATCAACAAAAATGATATCATGCTGGTACAGAGCGAGGTGGAAGAGAGGAACGCCATGAACGTCATGAACGTGGTGAGCAGCCCCTCCCTGGCTACCTCCCCCATGTACTTCGACTACCAGACCCGCCTGCCCCTCAGCTCGCCCCGGTCGGAGGTGATGTATCTCAAACCGTCCTCCAACAACCTGACTGTCCCTCAGGGGCACGCGGGCTGCCACACCAGCTTCACCGGACAAGGGACTAACGCGAGCGAGACCCCGGCCACTCGGATGTCCATAATTCAGACAGACAATTTTCCCGCAGAGCCCAATTACATGGGCAGCAGGCAGCAGTTTGTTCAAAGTAGCTCCACGTTTAAGGACCCAGAAAGAGCCAGCCTGAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGCTCCTGCTGTGACATGTCTGTTAGGGAGRCACTCAAGATGAAAACTACTTCAACTAAAAGCCAGCCACTTGAACAAGACCTGTTAGCATTTTATGAAAATACTATCTTGATTCTAGAATACAAAAAGAAGACCACAGATTGTATAAAATTATTTAAATCTTCAGTTTTAGAGGGCCAGATTCTCCCTACTTTATACATCTTCAAAACAAGCATTATCTGTGGTTGTCAGTATTTATGCCAGAAAATTCATTCTGGTAGACCTATTATTATGTCCAAAGGGTCACAAACACTTGAAACCATCCCCGAAGAACCGGAAGAGTGTGTTAATTGCACAGATGAATGCCGAGTGCTTGGTCATTCTGACAGGTGTTGGATGCCACAGTTCCCTGTAACCAATCAGGCTGAAAACGCAGATTACCGCACAAATCTCTTTGTACCCACAGTTGAAGCTAATGTTGAGACTGAGACTTACGAAACTGTGAATCCCACTGGGAAAAAGACTTTTTGTACATTTGGAAAAGACAAGCGAGAGCACACGATTCTCATTGCCAATGTGAAACCTTATTTAAAAGCCAAACGTGCCCTGAGCCCTCTCCTCCAAGAGGTCCCCTCAGCATCAAGCAGCCCAACCAAGGCATGCATCGAGCCTTGCACCTCAACGAAAGGCTCCCTGGATGGTTGCGAAGCAAAGCCAGGAGCTCTGGCCGAGGCGAGCAGCCAGTACTTGCCCACTGACAGTCAGTATCTCTCCCCCAGCAAGCAACCGAGAGACCCTCCCTTCCTGGCTTCTGAGCAGATGGCAAGGGTCTTCGCAGATGTGCATTCGAGAGCCAGCCGGGATTCCAGTGAGATGGGAGCTGTCCTGGAGCAGCTTGACCACTCCAACAGGGATCTGGCCAGAGAGCCGGTGGATGCAGAGGAAGTCGTGAGAGAAATCGACAAGCTTCTGCAGGACTGCCGGGGAAATGACCCTGTGGCTGTGAGAAAGTGA

Related Sequences

bmy_15366T0 SequenceType object (3)

Length: 1239 aa      View alignments
>bmy_15366T0
MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGKDARLQPGLPPAERGGGGGGRSKSGSYRVLENSAPHLLDVEADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVEIQDINDNAPSFPSDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLFALDVKSRGDGTKFPELVIQKALDREQQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGAGGGGGLSGPGGSVPFKLEENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFAVKILDENDNPPRFTKGLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNYEQTKAFEFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQRHWDMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNAMNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPSSNNLTVPQGHAGCHTSFTGQGTNASETPATRMSIIQTDNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSVREXLKMKTTSTKSQPLEQDLLAFYENTILILEYKKKTTDCIKLFKSSVLEGQILPTLYIFKTSIICGCQYLCQKIHSGRPIIMSKGSQTLETIPEEPEECVNCTDECRVLGHSDRCWMPQFPVTNQAENADYRTNLFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKACIEPCTSTKGSLDGCEAKPGALAEASSQYLPTDSQYLSPSKQPRDPPFLASEQMARVFADVHSRASRDSSEMGAVLEQLDHSNRDLAREPVDAEEVVREIDKLLQDCRGNDPVAVRK*