Sequence detailsbmy_15429 (Coding sequence)

Part of scaffold_1150 (SequenceType object (1))

For more information consult the page for scaffold_1150 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM8ENSTTRG00000012609 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 8

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011962, Bottlenosed dolphin)

Protein Percentage 99.25%
cDNA percentage 98.88%
Ka/Ks Ratio 0.07016 (Ka = 0.0038, Ks = 0.0535)

TRIM8ENSBTAG00000021071 (Cow)

Gene Details

probable E3 ubiquitin-protein ligase TRIM8

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000028059, Cow)

Protein Percentage 99.26%
cDNA percentage 96.65%
Ka/Ks Ratio 0.01256 (Ka = 0.003, Ks = 0.2396)

TRIM8 (Minke Whale)

Gene Details

tripartite motif containing 8

External Links

Gene match (Identifier: BACU012359, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.69%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0183)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM8 (Human)   Trim8 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1614 bp    Location:359033..371861   Strand:+
Raw sequence 
>bmy_15429
ATGGCGGAGAATTGGAAGAACTGCTTCGAGGAGGAGCTCATCTGCCCCATCTGCCTCCATGTCTTCGTGGAGCCGGTGCAATTGCCGTGCAAACACAACTTCTGTCGGGGCTGCATTGGCGAGGCGTGGGCCAAGGACAGCGGCCTGGTGCGCTGCCCAGAGTGCAACCAGGCCTACAACCAGAAGCCGGGCCTGGAGAAGAACCTGAAGCTCACCAACATCGTGGAGAAGTTCAACGCCCTGCACGTGGAGAAGCCGCCGGCGGCGCTGCACTGCGTGTTCTGCCGCCGTGGCCCCCCGCTGCCGGCGCAGAAGGTCTGCCTGCGCTGCGAGGCTCCCTGCTGCCAGTCCCACGTGCAGACGCACCTGCAGCAGCCCTCCACCGCCCGCGGGCACCTCCTGGTGGAGGCGGACGACGTGCGGGCCTGGAGCTGCCCGCAACACAACGCCTACCGCCTTTACCACTGCGAGGCCGAGCAGGTGGCCGTGTGCCAGTACTGCTGCTACTACAGCGGTGCGCATCAGGGACACTCGGTGTGCGACAAGATGCTGATGAAGCAGCAGGACCGGCTGGAGGAGCGAGAGCAGGACATTGAGGACCAACTGTACAAACTCGAGTCAGACAAGCGCCTGGTGGAGGAGAAGGTGAGCCAACTGAAGGAGGAAGTGCGGCTGCAGTACGAGAAGCTGCACCAGCTGCTGGATGAGGACCTGCGGCAGACGGTGGAGGTCCTGGACAAGGCCCAGGCCAAGTTCTGCAGCGAGAACGCAGCGCAGGCGCTGCATCTCGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCTGCTCTTCGACAAGACGGAGGATAACACCAAGTCTGTGAAAATCCTAATGGACAGGACCCAGACCTGCACAGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACTTGAACTCCAAGCTCTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGCTACGGAAGATGCTAGAAGGCCCCTTCAGCACACCGGTGCCCTTCCTGCAGAGCGTCCCCCTGTACCCTTGTGGTGTGAGCAGCTCTGGGGCGGAAAAGCGCAAGCACTCGACGGCCTTCCCTGAGGCCAGTTTCCTAGAGACGTCATCGGGCCCCGTGGGCAGCCAGTATGGGGCAGCGAGCACAGCCAGCGGCGAGGGCCAGTCAGGGCAGCCCCTGGGCCCCTGCAGCTCCACGCAGCACTTGGTGGCCCTGCCGGGCGGCGCCCAACCAGTGCACTCAAGTCCTGTGTTCCCCCCATCGCAGTATCCCAATGGCTCCGCCGCCCAGCAGCCCATGCTCCCCCAGTATGGGGGCCGCAAGATTCTCGTCTGTTCTGTGGACAACTGTTACTGTTCTTCCGTGGCCAACCATGGCGGCCACCAGCCCTACCCCCGCTCCGGCCACTTCCCCTGGACAGTGCCCTCACAGGAGTACTCACACGCGCTCCCGCCCACACCTTCTGTCCCCCAGTCCCTTCCCAGCCTGGCGGTCAGAGACTGGCTCGACGCCTCCCAGCAGCCTGGCCACCAGGATTTCTACAGGGTGTATGGGCAGCCGTCCACCAAACACTACGTGACGAGCTAA

Related Sequences

bmy_15429T0 SequenceType object (3)

Length: 538 aa      View alignments
>bmy_15429T0
MAENWKNCFEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQAYNQKPGLEKNLKLTNIVEKFNALHVEKPPAALHCVFCRRGPPLPAQKVCLRCEAPCCQSHVQTHLQQPSTARGHLLVEADDVRAWSCPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDKMLMKQQDRLEEREQDIEDQLYKLESDKRLVEEKVSQLKEEVRLQYEKLHQLLDEDLRQTVEVLDKAQAKFCSENAAQALHLGERMQEAKKLLGSLQLLFDKTEDNTKSVKILMDRTQTCTGSSLSPPKIGHLNSKLFLNEVAKKEKQLRKMLEGPFSTPVPFLQSVPLYPCGVSSSGAEKRKHSTAFPEASFLETSSGPVGSQYGAASTASGEGQSGQPLGPCSSTQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGRKILVCSVDNCYCSSVANHGGHQPYPRSGHFPWTVPSQEYSHALPPTPSVPQSLPSLAVRDWLDASQQPGHQDFYRVYGQPSTKHYVTS*