Part of scaffold_1171 (Scaffold)

For more information consult the page for scaffold_1171 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SARS ENSTTRG00000009548 (Bottlenosed dolphin)

Gene Details

seryl-tRNA synthetase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009048, Bottlenosed dolphin)

Protein Percentage 92.02%
cDNA percentage 91.89%
Ka/Ks Ratio 0.10479 (Ka = 0.0037, Ks = 0.0357)

SARS ENSBTAG00000012962 (Cow)

Gene Details

Serine--tRNA ligase, cytoplasmic

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017232, Cow)

Protein Percentage 97.08%
cDNA percentage 94.94%
Ka/Ks Ratio 0.06589 (Ka = 0.013, Ks = 0.1977)

SARS  (Minke Whale)

Gene Details

seryl-tRNA synthetase

External Links

Gene match (Identifier: BACU002745, Minke Whale)

Protein Percentage 99.81%
cDNA percentage 99.48%
Ka/Ks Ratio 0.04749 (Ka = 0.0009, Ks = 0.0184)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1695 bp    Location:123330..107096   Strand:-
>bmy_15551
CGGCCCAGAGTGGAGGGCGGGCTGAATGCTCCCGTCGCGCCTGCGCGGGAAGTGGGGGGCGGTCAGCGCGCCAGTGCAGTGCGGCAGTCACAGGGCGGCTGCTGTGGGACGAACCTCCCTTGTCTTAGTGTTGGCCCTGGAGAAGGAACGATGGTGCTGGATCTGGATTTGTTTCGGGTGGATAAAGGAGGGGACCCAGCCCTCATCCGAGAGTCGCAGGAGAAGCGCTTCAAGGACCCGGGACTGGTGGACCAGCTGGTGAAGGCAGACAGCGAGTGGCGACGATGCAGATTTCAGGCAGACAACTTGAACAAGCTGAAGAACCTATGCAGCAAGACAATTGGAGAGAAAATGAAGAAAAAAGAGCCAATGGGAAATGATGAGTCCATTCCGGAAGATATATTAAATCTCGATGAGCTCACTGCAGACACTTTAACTAACCTGAAAGTCTCACAAATCAAAAAAGTCCGACTCCTCATCGATGAAGCCATCCTGAAGTGTGATGCAGAGCGGATAAAGCTGGAAGCAGAGCGATTTGAGAACCTTCGCGAGATTGGTAACCTTCTGCACCCCTCTGTGCCCATCAGCAATGATGAGGATGCCGACAACAAAGTAGAGAGGATTTGGGGTGATTGTACCGTCAGGAAGAAGTACTCTCACGTGGACCTGGTGGTGATGGTAGATGGCTTTGAAGGCGAAAAGGGGGCTGTGGTGGCTGGGAGTCGAGGGTACTTCCTGAAGGGGGTCCTGGTGTTCCTGGAACAGGCACTCATCCAGTATGCTCTTCGCACCTTGGGAAGTCGGGGCTACACTCCCATTTATACCCCCTTCTTCATGAGGAAGGAGGTCATGCAGGAAGTGGCACAGCTCAGCCAGTTTGATGAAGAACTTTATAAGGTGATTGGCAAAGGCACCGAAAAGTCTGATGACAGCACCTATGAGGAAAAATATCTGATTGCCACCTCCGAACAGCCCATTGCTGCTCTCCACCGGGACGAGTGGCTTCGGCCAGAGGATTTGCCAATCAAGTATGCCGGCCTGTCCACCTGCTTTCGCCAGGAGGTGGGCTCCCACGGCCGTGACACCCGTGGCATCTTTCGAGTCCATCAGTTTGAGAAGATTGAACAGTTTGTCTACTCATCGCCACATGACAACAAGTCCTGGGAGATGTTTGAGGAGATGATTACTACCGCAGAGGAGTTCTACCAGTCTCTGGGGATCCCTTACCATATCGTGAATATTGTCTCAGGTTCTTTGAATCACGCTGCCAGTAAGAAGCTTGACCTGGAGGCCTGGTTTCCGGGCTCAGGAGCCTTCCGTGAGTTAGTCTCCTGTTCTAACTGCACAGACTATCAGGCTCGCCGGCTCCGAATCCGATACGGGCAAACCAAGAAGATGATGGACAAGGTGGAGTTTGTCCACATGCTCAATGCCACGATGTGCGCCACAACTCGCACCATCTGTGCCATCCTAGAGAACTACCAGACAGAGAAGGGCATCCTCGTGCCTGAGAAATTGAAGGAATTTATGCCACCAGGTCTCCAGGAACTGATCCCCTTTGTGAAGCCTGCACCCATTGACCAGGAGCCATCGAAGAAGCAGAAGAAGCAGCATGAGGGCAGCAAAAAGAAAGGGGCAGCGAGAGATGTTGCCCTGGAAAGCCAGCTGCAGAATATGGAGGTCACTGATTCCTGA

Related Sequences

bmy_15551T0 Protein

Length: 565 aa      View alignments
>bmy_15551T0
RPRVEGGLNAPVAPAREVGGGQRASAVRQSQGGCCGTNLPCLSVGPGEGTMVLDLDLFRVDKGGDPALIRESQEKRFKDPGLVDQLVKADSEWRRCRFQADNLNKLKNLCSKTIGEKMKKKEPMGNDESIPEDILNLDELTADTLTNLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGTEKSDDSTYEEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGILVPEKLKEFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEGSKKKGAARDVALESQLQNMEVTDS*