Part of scaffold_1171 (Scaffold)

For more information consult the page for scaffold_1171 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF38B ENSTTRG00000006479 (Bottlenosed dolphin)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006131, Bottlenosed dolphin)

Protein Percentage 99.45%
cDNA percentage 98.84%
Ka/Ks Ratio 0.0752 (Ka = 0.0026, Ks = 0.0341)

PRPF38B ENSBTAG00000047874 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055594, Cow)

Protein Percentage 97.42%
cDNA percentage 95.58%
Ka/Ks Ratio 0.08605 (Ka = 0.0121, Ks = 0.1401)

PRPF38B  (Minke Whale)

Gene Details

pre-mRNA processing factor 38B

External Links

Gene match (Identifier: BACU002753, Minke Whale)

Protein Percentage 99.08%
cDNA percentage 99.26%
Ka/Ks Ratio 0.22903 (Ka = 0.0041, Ks = 0.0177)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1641 bp    Location:553449..543586   Strand:-
>bmy_15563
ATGGCTAACAACAGCCCCGCGCTGACAGGCAACTCGCAGCCGCAGCACCAGGCGGCCGCAGCCGCGGCCCAGCAGCAGCAGCAGCAGTGCGGCGGCGGCGGTGGCGCCACCAAGCCGGCAGTCTCGGGCAAGCAGGGCAATGTGCTGCCGCTGTGGGGCAACGAAAAGACTATGAATCTCAACCCCATGATCTTGACCAATATCCTGTCGTCGCCTTACTTCAAAGTGCAGCTCTACGAGCTCAAGACCTACCACGAGGTGGTGGACGAGATCTACTTTAAGGTCACACATGTTGAACCATGGGAGAAAGGAAGCAGGAAAACAGCTGGCCAAACAGGGATGTGCGGAGGGGTTCGAGGCGTTGGGACAGGAGGAATTGTTTCTACAGCTTTTTGCCTGTTATACAAATTATTTACTCTGAAGTTAACTCGCAAGCAAGTGATGGGTCTTATAACACACACAGACTCTCCATATATTAGAGCCCTTGGATTTATGTATATAAGGTACACACAGCCCCCTACAGATCTATGGGATTGGTTTGAATCCTTCCTTGATGATGAAGAGGACCTAGATGTGAAGGCTGGTGGAGGCTGTGTAATGACCATTGGAGAAATGCTACGGTCTTTTCTCACAAAACTGGAGTGGTTTTCTACTTTGTTTCCAAGAATTCCGGTTCCAGTTCAGAAGAATATCGATCAACAGATTAAAACCCGACCAAGAAAAATCAAGAAAGATGGAAAGGAAAGTGCTGAGGAAATAGACAGACATGTTGAACGCAGGCGTTCAAGGTCTCCAAGGAGATCACTGAGTCCACGGAGGTCCCCAAGAAGATCCAGAAGTAGAAGCCATCATCGGGAGGGCCATGGGTCTTCTAGTTTTGATCGAGAATTAGAAAGAGAGAAAGAACGCCAGCGACTAGAGCGTGAAGCCAAAGAAAGGGAAAAAGAAAGGCGAAGATCCCGAAGTATTGATCGGGGGCTAGAACGCAGGCATAGCAGGAGTAGGGAAAGACATAGAAGCCGTAGTCGAAGTCGTGATAGGAAAGGGGATAGAAGGGACAGGGATCGGGAAAGAGAGAAAGAAAATGAGAGAGGTAGAAGACGAGATCGTGACTATGATAAGGAAAGAGGTAATGACCGAGAAAAGGAGAGGTCAAGAGAACGGTCCAAGGAACGGAGAAGTAGGGGTGAGGTAGAAGAAAAGAAATATAAAGACGACAAAGATGATAGGCGGCATAGAGATGACAAAAAAGATTCCAAGAAAGAGAAAAAACATAGTAGAAGTAGAAGCAGAGAAAGAAAACATAGAAGTAGGAGTAGAAGTAGAAATGCAGGGAAACGAAGTAGAAGCAGGAGCAAAGAGAAATCAAGTAAACATAAAAATGAAAGTAAAGAAAAATCAAATAAACGGAGTAGAAGTGGCAGTCAAGGAAGAACTGACAGTGTTGAAAAATCAAGAAAACGGGAACATAGCCCCAGCAAAGAAAAGTCTAGGAAGCGTAGCAGAAGCAAAGAACGTTCCCACAAACGAGATCACAGTGATAGTAAGGACCAGTCTGACAAACATGATCGCCGAAGGAGCCAAAGTATAGAATCAGAGAGCCAAGAAAAACAACATAAAAACAAAGACGAGACTGTGTGA

Related Sequences

bmy_15563T0 Protein

Length: 547 aa      View alignments
>bmy_15563T0
MANNSPALTGNSQPQHQAAAAAAQQQQQQCGGGGGATKPAVSGKQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKESAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRHSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNDREKERSRERSKERRSRGEVEEKKYKDDKDDRRHRDDKKDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSRKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIESESQEKQHKNKDETV*