Part of scaffold_1191 (SequenceType object (1))

For more information consult the page for scaffold_1191 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SDC1ENSTTRG00000004870 (Bottlenosed dolphin)

Gene Details

syndecan 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004592, Bottlenosed dolphin)

Protein Percentage 82.59%
cDNA percentage 87.94%
Ka/Ks Ratio 0.56255 (Ka = 0.1139, Ks = 0.2025)

SDC1ENSBTAG00000011154 (Cow)

Gene Details

Syndecan-1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000014810, Cow)

Protein Percentage 79.66%
cDNA percentage 83.95%
Ka/Ks Ratio 0.27255 (Ka = 0.12, Ks = 0.4405)

SDC1 (Minke Whale)

Gene Details

syndecan 1

External Links

Gene match (Identifier: BACU010254, Minke Whale)

Protein Percentage 96.93%
cDNA percentage 97.16%
Ka/Ks Ratio 0.20937 (Ka = 0.0148, Ks = 0.0706)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 894 bp    Location:59840..55990   Strand:-
>bmy_15716
ATGGATGTCCTGTCCTTCCTTCCCCAACAAACTGTGGCTATAAATGTGCCCCCCGAAGATCAGGATGGCTCTGGAGATGACTCTGACAACTTCTCTGGCTCGGGCGCAGGTGCTCTGCCAGATATCACCATGTCACAGCAGACCCCCTCCACCTGGAAGGACAAGGGGCTCCTGACAGCCATGCCCACGGCTCCAGAGCCCAGCCGCCCGGACACTACTGCCACCTCCACCTCCATCCTGCCGACTGGAGAACAGCCTGAGGAGGGAGGGGTGGTGCTCCTGGCAGAGGTGGAACCTGGCCTCACCGCCCAGGAGAAGGAGGCCACCCACCCACCCAGTGAGACCACGCTGCACCCAACCACCCACCGGGCATCAACAGCCAGAGCCACCACGGCCCAGGGGCCTGCCACCTCCCATCCCCACAGGGACGTGCAGCCTGACCACCACGAGACCGCAGCTCCCACAGGTCACGGTCAGCCCGAGCCTCAGGCTCCCAGCGTGGAGGATCGAGGTTCTTCTGCCACCGAGAAGGCTGCTGAGGATGAAGCCTCCACCCAGCTCCCAGAAGGAGAGGACTCTGGGGAGCAGGACTTCACCTTTGACGTGTCCGCGGAGAACTCAGCCGGGGTCACTGTGGAACCTGGCCAGCGGAATGGGCCCCCAGGGGATCCCGGGGACACGGGAGCCTCGCAGGGCCTCCTGGACAGGAAGGAAGTGCTGGGAGGGGTCATTGCCGGAGGCCTCGTGGGACTCATCTTTGCTGTATGCCTGGTGGGTTTCATGCTGTACCGGATGAAGAAGAAGGACGAGGGCAGCTACTCCTTGGAGGAACCAAAACAAGCCAATGGCGGGGCCTACCAGAAGCCCAGCAAGCAGGAGGAGTTCTACGCCTGA

Related Sequences

bmy_15716T0 SequenceType object (3)

Length: 298 aa      View alignments
>bmy_15716T0
MDVLSFLPQQTVAINVPPEDQDGSGDDSDNFSGSGAGALPDITMSQQTPSTWKDKGLLTAMPTAPEPSRPDTTATSTSILPTGEQPEEGGVVLLAEVEPGLTAQEKEATHPPSETTLHPTTHRASTARATTAQGPATSHPHRDVQPDHHETAAPTGHGQPEPQAPSVEDRGSSATEKAAEDEASTQLPEGEDSGEQDFTFDVSAENSAGVTVEPGQRNGPPGDPGDTGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPSKQEEFYA*