Part of scaffold_1213 (Scaffold)

For more information consult the page for scaffold_1213 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LBP ENSTTRG00000016773 (Bottlenosed dolphin)

Gene Details

lipopolysaccharide binding protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015902, Bottlenosed dolphin)

Protein Percentage 91.51%
cDNA percentage 94.26%
Ka/Ks Ratio 0.67123 (Ka = 0.0293, Ks = 0.0436)

BT.24181 ENSBTAG00000016864 (Cow)

Gene Details

lipopolysaccharide-binding protein precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022428, Cow)

Protein Percentage 82.12%
cDNA percentage 88.08%
Ka/Ks Ratio 0.41757 (Ka = 0.1004, Ks = 0.2404)

LBP  (Minke Whale)

Gene Details

lipopolysaccharide binding protein

External Links

Gene match (Identifier: BACU015505, Minke Whale)

Protein Percentage 97.41%
cDNA percentage 98.27%
Ka/Ks Ratio 0.38975 (Ka = 0.0121, Ks = 0.031)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1278 bp    Location:111148..82654   Strand:-
>bmy_15746
ATGGGGACCTCGGCTGGGGCCCTGTCCTCCCTCCTGCTGGGAATGATGCTCACATACACCCCCGGGGCCCTGGGTGCCAACCCTGGCCTGGTCGCCAGGATCACTGACAAGGGCTTGGAGTATGTGGCCCAAGAGGAGCTGGTGACTCTGCAGAGTAAACTGTATGATATCACACTGCCCGACTTCAGTGGGGACGTCAAGATCAAATACATCGGCAATGTGCACTATGAATTCCACAGCCTGGACATCCACAGCTGTGAGCTGCTCGGCTCTGCTCTGAAGCCCCTCCCCAGCCACGGCCTGCATTTCTCCATCTCCGACTCCTTCATCAGAGTCAAGGGCAAGTGGAAGGTGCGCAAGCGGATACTGAAACTAGACGGCTCCTTTGACGTGAAAGTCAAGGGCATCACCATTTCAGTCAATCTCCTCTTGGGCAGCGAGCCCTCTGGGAGACCCAAGGTCGCTGTTTCTAGCTGCAGCAGCCCCATCCATGATGTGGAGGTGCACATGTCGGGAGATTTGGGGTGGCTGCTGAATCTCTTCCACCATCAGATCGAGTCCAAGTTCCGAAGAGTATTGGAGAGCAAGATTTGCAAAATAATCCAGGACTCGGTGACCTCTGACCTACAGCCTTATCTCCAAACTCTRCCAGTCACCATGGAGATGGACATTTTCGCTGGGATTGATTACAGCTTAATGGAGGCCCCTCAGGCAACAGCGGAAATACTGGACGTGATGCTTAAGGGTGAAATTTTTAGCCGTGATCACCGCTCCCCAGTTGCCTTCCTTGCTCCTGTCATGAGCCTTCCTGAGGAACACAGCCGAATGGTCTACTTTGCCATCTCTAATTATGCCTTCAACACCGCCAGCCTAGTTTATCACAAAGTGGGATACCTGAACTTTTCCATCACAGATGACATGGTTCCGCCTACTTCTAACATCCGACTGACCACCAAGTCCTTCCGTGCCTTCTTCCCCCGGGCCACTAATGTGTCTGTCATGTTGACCTTCAACGCCAGCAAGATCACTGGATTCCTGAAGCCAGCAAAGATGCAAGTGGAACTGAAAGAATCTAAAGTTGGAGTATTCAATGTGGAGCTGTTGGAGGCGCTGCTCAATTACTACCTTCTCAACACCCTCTACCCCAAGGTCAATGATAAGTTGGCAGAAGGCTTCCCCCTCCCTCTGCTAAAGCGTATTCAGCTCTATGACCCTGTTCTCCAGATCCACAAGGACTTCCTGTTTTTGGGCACCAACGTCCGGTACCTGAGAGTTTGA

Related Sequences

bmy_15746T0 Protein

Length: 426 aa      View alignments
>bmy_15746T0
MGTSAGALSSLLLGMMLTYTPGALGANPGLVARITDKGLEYVAQEELVTLQSKLYDITLPDFSGDVKIKYIGNVHYEFHSLDIHSCELLGSALKPLPSHGLHFSISDSFIRVKGKWKVRKRILKLDGSFDVKVKGITISVNLLLGSEPSGRPKVAVSSCSSPIHDVEVHMSGDLGWLLNLFHHQIESKFRRVLESKICKIIQDSVTSDLQPYLQTLPVTMEMDIFAGIDYSLMEAPQATAEILDVMLKGEIFSRDHRSPVAFLAPVMSLPEEHSRMVYFAISNYAFNTASLVYHKVGYLNFSITDDMVPPTSNIRLTTKSFRAFFPRATNVSVMLTFNASKITGFLKPAKMQVELKESKVGVFNVELLEALLNYYLLNTLYPKVNDKLAEGFPLPLLKRIQLYDPVLQIHKDFLFLGTNVRYLRV*