Part of scaffold_1233 (Scaffold)

For more information consult the page for scaffold_1233 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHMP4C ENSTTRG00000002766 (Bottlenosed dolphin)

Gene Details

charged multivesicular body protein 4C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002594, Bottlenosed dolphin)

Protein Percentage 84.53%
cDNA percentage 86.0%
Ka/Ks Ratio 0.30702 (Ka = 0.0356, Ks = 0.116)

CHMP4C ENSBTAG00000004792 (Cow)

Gene Details

charged multivesicular body protein 4c

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006291, Cow)

Protein Percentage 85.0%
cDNA percentage 86.48%
Ka/Ks Ratio 0.20814 (Ka = 0.0824, Ks = 0.3958)

CHMP4C  (Minke Whale)

Gene Details

charged multivesicular body protein 4C

External Links

Gene match (Identifier: BACU011188, Minke Whale)

Protein Percentage 95.03%
cDNA percentage 95.76%
Ka/Ks Ratio 0.34198 (Ka = 0.0269, Ks = 0.0786)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 546 bp    Location:248903..254822   Strand:+
>bmy_15791
ATGTGGCTTCTCCCTTATTTAGCTGCATTACAGGCACTAAAGAGAAAGAAGAGGTTTGAGAAGCAGCTCACTCAGATTGATGGCACACTTTCTACCATTGAGYTCCAGAGAGAAGCCTTGGAAAACTCACACACCAACACGGAAGTGTTAAGGAACATGGGCATTGCAGCRAAAGCCATGAAAGCAGTTCATGAAAACATGGATCYGAACAAAATAGATGATTTGATGCAAGAGATCACAGAGCAACAGGATATTGCCCAAGAAATCTCAGAAGCGTTTTCTCAACGAGTTGGATTTGGCGATAACTTTGATGAGGATGAGCTGATGGCAGAACTTGAGGAACTGGAGCAGGAAGAATTAAATAAGAAGATGGCAAATATCCGACTTCCAAATGTGCCTTCCTCCTCCCTCCCAGCACAGCCAGACAGAGTACCAGGTCGCATGTCAAGCACGTCCTCCTCTGCACATCGATCCCGAGCAGCATCTTCCAGGAGGGCAGAAGAAGAGGATGATGATATCAAACAATTGGCAGCTTGGGCCACTTAA

Related Sequences

bmy_15791T0 Protein

Length: 182 aa      View alignments
>bmy_15791T0
MWLLPYLAALQALKRKKRFEKQLTQIDGTLSTIEXQREALENSHTNTEVLRNMGIAAKAMKAVHENMDXNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDNFDEDELMAELEELEQEELNKKMANIRLPNVPSSSLPAQPDRVPGRMSSTSSSAHRSRAASSRRAEEEDDDIKQLAAWAT*