Sequence detailsbmy_15851 (Coding sequence)

Part of scaffold_1218 (SequenceType object (1))

For more information consult the page for scaffold_1218 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS39ENSTTRG00000002556 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 39 homolog (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000002398, Bottlenosed dolphin)

Protein Percentage 90.27%
cDNA percentage 89.65%
Ka/Ks Ratio 0.05307 (Ka = 0.0018, Ks = 0.0346)

VPS39ENSBTAG00000032055 (Cow)

Gene Details

vam6/Vps39-like protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000006949, Cow)

Protein Percentage 99.19%
cDNA percentage 95.29%
Ka/Ks Ratio 0.02136 (Ka = 0.0038, Ks = 0.18)

VPS39 (Minke Whale)

Gene Details

vacuolar protein sorting 39 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU004943, Minke Whale)

Protein Percentage 96.17%
cDNA percentage 96.69%
Ka/Ks Ratio 0.43631 (Ka = 0.0261, Ks = 0.0598)

Additional orthologs identified in other species via the OPTIC pipeline.

VPS39 (Human)   Vps39 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2595 bp    Location:181899..132483   Strand:-
Raw sequence 
>bmy_15851
ATGCACGACGCCTTTGAACCGGTGCCGATCCTAGAAAAGCTGCCTCTGCAGATCGACTGTCTGGCTGCCTGGGAGGAATGGCTGCTTGTTGGAACGAAACAAGGTCATCTTCTTCTCTATAGGATTCGGAAGGATGTTGGTTGCAACAGGTTTGAAGTGACACTAGAGAAATCCAATAAGAACTTCTCCAAAAAGATTCAGCAGATCCATGTGGTTTCCCAGTTTAAGATTCTGGTCAGCTTGTTAGAAAATAATATTTATGTCCATGACCTGTTGACATTTCAACAAATCACTACAGTTTCCAAGGCAAAGGGAGCATCACTGTTCACATGTGACCTCCAGCACACAGAGACCGGGGAGGAGGTGTTGCGGATGTGTGTGGCTGTGAAGAAGAAGCTGCAGCTCTATTTCTGGAAAGACAGGGAATTTCATGAATTGCAGGGGGACTTTAGTGTACCAGATGTGCCCAAGTCCATGGCATGGTGTGAAAATGCTATCTGTGTGGGTTTCAAGAGAGACTACTACCTAATAAGGGTAGATGGAAAGGGGTCCAACAAAGAGCTATTTCCAACAGGAAAACAGCTGGAGCCCTTAGTTGCACCTCTGGCAGATGGAAAGGTGGCTGTGGGTCAGGATGATCTCACCGTGGTGCTCAATGAGGAGGGGATCTGCACACAGAAGTGTGCCCTGAACTGGACAGACATCCCAGTGGCCATGGAGCACCAGCCTCCCTACATCATTGCAGTGTTGCCTCGATATGTGGAGATCCGGACATTTGAGCCAAGGCTTCTGGTCCAGAGCATTGAATTGCAAAGACCCCGTTTCATTACCTCAGGAGGATCAAACATTATCTATGTGGCCAGCAACCATTTTGTTTGGAGACTCATTCCAGTCCCCATGGCAACCCAAATCCAACAGCTTCTCCAGGACAAGCAGTTTGAATTGGCTCTGCAGCTTGCACAACAGATCCATCACATCAAGAACTTGTATGCCTTCAACCTCTTCTGCCAGAAGCGTTTTGATGAGTCCATGCAGGTCTTTGCTAAACTTGGCACAGATCCTACACATGTGATGGGCCTGTACCCAGACCTGCTACCCACAGACTACAGGAAGCAGCTACAGTATCCTAACCCACTGCCTGTGCTCTCTGGGGCTGAGTTGGAGAAGGCTCACTTAGCTCTGATTGACTACCTGACACAGAAACGAAGCCAATTGGTCAAGAAGCTGAATGACTCTGATCACCAGTCTAGCACCTCCCCGCTCATGGAAGGCACTCCTACCATCAAATCCAAGAAGAAGCTGCTGCAAATCATTGACACCACCCTGCTCAAGTGCTACCTCCATACGAACGTGGCCCTGGTGGCCCCCTTGCTGCGCCTGGAGAACAACCACTGCCACATCGAAGAGAGCGAGCATGTGCTGAAGAAGGCTCACAAGTACAGCGAACTGATCATTCTGTACGAGAAGAAGGGGCTCCATGAGAAAGCTCTGCAGGTGCTGGTGGACCAGTCCAAGAAAGCGAATTCCCCTCTGAAAGGCCATGAGAGGACAGTGCAGTACCTGCAACACCTGGGCACAGAAAACCTGCATTTGATTTTTTCCTACTCAGTGTGGGTGCTGAGAGACTTTCCAGAGGATGGGCTGAAGATATTTACTGAGGACCTCCCAGAGGTGGAGTCTCTGCCACGAGACCGAGTGCTTGGCTTCTTAGTGGAGAATTTTAAGGGTCTGGCAATTCCGTATCTGGAACACGTCATCCACGTTTGGGAGGAGACGGGCTCTCGGTTCCACAACTGCCTGATCCAGCTGTACTGTGAGAAGGTGCAAGGTCTGATGAAGGAGTATCTCCTGTCCTTCCCTGCAGGCAAAGCTCCAGTCCCTGCTGGTGAGGAAGAGGGAGAGCTGGGAGAATACCGACGGAAGCTCCTTAAGTTCTTGGAAATTTCTAGCTACTATGACCCAGGCCGGCTCATCTGTGATTTTCCTTTTGATGGCCTCTTAGAAGAGCGTGCTCTCCTGCTGGGACGCATGGGGAAACACGAACAAGCTCTCTTCATCTATGTCCACATCCTGAAGGATACGAGAATGGCTGAAGAGTACTGCCACAAGCATTATGACCAAAATAAAGATGGCAACAAAGATGTGTATCTGTCCCTGCTCCGGATGTACCTGTCCCCGCCCAGCGTTCACTGCCTGGGACCAATCAAGCTGGAACTTCTGGAGCCGCAAGCCAACCTCCAAGCCGCCCTGCAGGTCCTCGAGCTGCACCACGGCAAACTGGATACCACCAAGGCCATCAACCTTCTGCCAGCGAACACTCAGATTAACGATATACGCATCTTTCTGGAAAAGGTCTTGGAAGAGAATGCACAAAAGAAACGGTTCAATCAAGTGCTCAAGAACCTTCTCCATGCAGAGTTCCTGAGGGTCCAGGAAGAGCGGATTTTACACCAGCAGGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCATGGTGTGTAAGAAGAAGATTGGGAACAGTGCATTTGCAAGATACCCCAATGGGGTGGTCGTGCACTATTTCTGCTCCAAAGAGGTCAACCCGGCTGACACCTGA

Related Sequences

bmy_15851T0 SequenceType object (3)

Length: 865 aa      View alignments
>bmy_15851T0
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENAICVGFKRDYYLIRVDGKGSNKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRRKLLKFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNKDGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHGKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT*