Part of scaffold_1240 (Scaffold)

For more information consult the page for scaffold_1240 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDH8 ENSTTRG00000009148 (Bottlenosed dolphin)

Gene Details

protocadherin 8

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008664, Bottlenosed dolphin)

Protein Percentage 79.85%
cDNA percentage 83.94%
Ka/Ks Ratio 0.2392 (Ka = 0.1304, Ks = 0.545)

PCDH8 ENSBTAG00000018179 (Cow)

Gene Details

protocadherin-8 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024190, Cow)

Protein Percentage 77.12%
cDNA percentage 80.86%
Ka/Ks Ratio 0.14728 (Ka = 0.1439, Ks = 0.9769)

PCDH8  (Minke Whale)

Gene Details

protocadherin 8

External Links

Gene match (Identifier: BACU012155, Minke Whale)

Protein Percentage 40.42%
cDNA percentage 54.31%
Ka/Ks Ratio 0.07276 (Ka = 0.6422, Ks = 8.8254)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2007 bp    Location:324956..327051   Strand:+
>bmy_15897
ATGTCTCACTGGAGGCTCAGATTCCCCACTGACACTTTACACAGGGCTGGACTGGGGTCCCTGTTACTTCTGCTGCTGCTTCTGGTGTCAGGGTCTTGCACGGAAACTGTCAATTTCCTCACCTACGAGGAAGAAGCCCTCGGCACCTCCATCGGTGTTATGTCTGACCACATCCTGTTTAATTCCCAGCGCGAGGTGCCAGGCCAGTTCCGCCTGGTTAAGTTCAACAGCTCGCTGATCCAGGTGCAAGAGGGCGATGGGCAGCTGACCGTCGGAGACGCGGGCCTGGACCTCGAGCGGCTGTGCGGCCAGGCCTTCGACGTGGTCAGCTTTTGGCAGGAGCGGTTCCGGCTGGTGCACGTGGAGGTGGAGGTGAGGGACGTCAACCACCACGCGCCGCGCTTTCCCCGGGCCCAGATCCCCGTCGAGGTGTCCGAGGGCGCGGCCGTGGGCACGCGCATACCCTTAGAGGTGCCGGTGGACGAGGACGTGAGCGCCAATGGGCTGCAGAGCGTGCGCCTGGCCGAGCCGCACAGACCCTTCCGCGTGGAGCTGCAGACGCGCGCGGACGGTGCCCAGTGCGCCGACCTGGTGCTGCTGCAGGAGCTGGACCGCGAGAGCCAGGCCGCCTACAACCTGGAGCTGGTGGCCCAGGACGGAGGCCGCCCGCCGCGCTCCGCCACGGCCGCCCTCAGTGTGCGCGTGCTGGACGCGAACGACCACAGCCYGGCCTTCCCGCAGGGCGCCGTGGCCGAGGTGGAGCTGGCGGAGGACGCGCCCGTGGGCTCGCTACTGCTCGACCTGGACGCGGCGGACCCCGACGAGGGCCCCAACGGCGACGTGGTGTTCGCCTTCGGCTCCCGTACCCCGSCCGAGGCGCGCCGCCTCTTCCGCCTCGACCCGCGCTCGGGCCGCCTCACCCTGGCCGGGCCCGTGGACTACGAGCGCCAGGACACTTACGAACTGGACGTGCGGGCGCAGGACCGCGGCCCCGGGCCCCGCGCCGCCACCTGCAAGGTCATCGTGCGCATCCGCGACGTCAATGACAACGCGCCGGACATCGCCATCACCCCGCTGGCCGCCCCGGGCGCGCCTGTCGCCTCGYCCTTCGCCGCCGCCGCCGCCGCTSTCGGGGGTGCGGACGCGACCTCGTCGTCCGGGCCCGGGACGCCAGAGGCCGGCGCCATCTCGCTGGTGCCAGAGGGGGCGGCACGCGAGAGCCTGGTGGCGCTGGTCAGCACCTCGGACAGGGACTCGGGCGCCAACGGGCAGGTGCGCTGCGCCCTCTATGGGCACGAGCACTTCCGGCTGCAGCCGGCCTACGCGGGCAGCTACCTGGTGGTGACCGCGGGGTCGCTGGACCGCGAGCGCATCGCCGAGTACAACCTGACGCTGGTGGCCGAGGACCGCGGCGCGCCCCCGCTGCGCACTGTACGGCCCTACCTGGTGCGGGTGAGCGACGAGAACGACAACGAGCCGCTCTTCACGCGGCCGGTCTACGAGGTGTCGGTGCGTGAGAACAACCCGCCCGGGGCCTACTTGGCCACGGTGGCCGCCAGGGACCCGGACCTGGGCCGCAACGGCCAGGTCACCTACCGGCTGCTGGAGGCCGAGGAACTGGCTGAGCTGCGGCTGGGGCTGGAGGCGCTCGACGGCGGCTCTCCGCCGCTCCGGGGCCGGGCCGTGGTGCGGCTGCATGTGGAGGACCAGAACGACCACGCGCCTCGGCTGGTGACCCCGCCACTCGTCAGTGACTCAGCCCAGGCCCCTCTGCCCCGGGACGCGCCCCTGGGCTACCTGCTGACCCGACTGCAGGCTAGGGACGCGGACCAAGACCTCAACGCGGAGCTGACTTACATCCAGCTCCGCAGCGACTGCGGCCCCGGGGCGCTAGCGCTACACCCGGCCACGGGTGAGCTGTCCCTGCAGTGCCGCCTGTCCCCGCAGCCCGCCGACCCGCTAACGGCGGCCGTCGTGGTGCGGGACGGAGGCCGGCTGACCCGGTAG

Related Sequences

bmy_15897T0 Protein

Length: 669 aa      View alignments
>bmy_15897T0
MSHWRLRFPTDTLHRAGLGSLLLLLLLLVSGSCTETVNFLTYEEEALGTSIGVMSDHILFNSQREVPGQFRLVKFNSSLIQVQEGDGQLTVGDAGLDLERLCGQAFDVVSFWQERFRLVHVEVEVRDVNHHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVSANGLQSVRLAEPHRPFRVELQTRADGAQCADLVLLQELDRESQAAYNLELVAQDGGRPPRSATAALSVRVLDANDHSXAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGDVVFAFGSRTPXEARRLFRLDPRSGRLTLAGPVDYERQDTYELDVRAQDRGPGPRAATCKVIVRIRDVNDNAPDIAITPLAAPGAPVASXFAAAAAAXGGADATSSSGPGTPEAGAISLVPEGAARESLVALVSTSDRDSGANGQVRCALYGHEHFRLQPAYAGSYLVVTAGSLDRERIAEYNLTLVAEDRGAPPLRTVRPYLVRVSDENDNEPLFTRPVYEVSVRENNPPGAYLATVAARDPDLGRNGQVTYRLLEAEELAELRLGLEALDGGSPPLRGRAVVRLHVEDQNDHAPRLVTPPLVSDSAQAPLPRDAPLGYLLTRLQARDADQDLNAELTYIQLRSDCGPGALALHPATGELSLQCRLSPQPADPLTAAVVVRDGGRLTR*