Part of scaffold_1231 (Scaffold)

For more information consult the page for scaffold_1231 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSMB1 ENSTTRG00000014822 (Bottlenosed dolphin)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014051, Bottlenosed dolphin)

Protein Percentage 93.72%
cDNA percentage 95.4%
Ka/Ks Ratio 0.34621 (Ka = 0.0265, Ks = 0.0767)

PSMB1 ENSBTAG00000007685 (Cow)

Gene Details

proteasome subunit beta type-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010108, Cow)

Protein Percentage 94.19%
cDNA percentage 91.15%
Ka/Ks Ratio 0.09417 (Ka = 0.0283, Ks = 0.3006)

PSMB1  (Minke Whale)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 1

External Links

Gene match (Identifier: BACU011691, Minke Whale)

Protein Percentage 95.44%
cDNA percentage 97.51%
Ka/Ks Ratio 0.77259 (Ka = 0.0225, Ks = 0.0292)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 753 bp    Location:56231..73621   Strand:+
>bmy_15936
ATGTTGTCCTCGGTAGCCGCGTACTCGGGCCCGGGCAGAGACCTGGCCATGGAGCCTCACAGCGCCGCGGGCCCTTTGCAGCTGCGCTTTTCGCCCTACGCTTTCAACGGAGGTACTATATTGGCAATTGCAGGAGAAGATTTTTCAATTGTTGCTTCTGACACCCGACTGAGTGAGGGGTTTTCAATTCACACACGGGACAGCCCCAAATGTTACAAATTTTTTCTGAAATGTGGTTTTTTTWACAGAACAGACAAAACAGTCATTGGATGTAGCGGTTTTCATGGAGACTGTCTTACCCTGACAAAGATTATTGAAGCAAGACTAAAGATGTATAAACATTCCAATAATAAGACCATGACGACAGGGGCGATTGCTGCAATGCTGTCTACAATCCTGTATTCTAGGCGCTTTTTTCCCTACTATGTGTACAACATCATCGGGGGACTCGATGAAGAAGGGAAGGGAGCTGTGTACAGCTTTGATCCGGTGGGGTCCTACCAGAGAGACTCCTTCAAGGCTGGAGGCTCAGCCAGTGCCATGCTGCAGCCCCTGCTTGACAACCAGGTTGGTTTTAAGAACATGCAGAACGTGCAGCGTGTCCCACTGTCCCTGGACAGAGCCACGCGGCTCGTGAGAGAYGTCTTCGTTTCTGCCGCCGAGAGGGACGTGTACACTGGGGACGCGCTCAGGATCTGCATCGTGACCAAGGAGGGCATCAAGGAGGAGACTGTGCCCCTGCGGAAGGACTGA

Related Sequences

bmy_15936T0 Protein

Length: 251 aa      View alignments
>bmy_15936T0
MLSSVAAYSGPGRDLAMEPHSAAGPLQLRFSPYAFNGGTILAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKFFLKCGFFXRTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVQRVPLSLDRATRLVRDVFVSAAERDVYTGDALRICIVTKEGIKEETVPLRKD*