Part of scaffold_1244 (Scaffold)

For more information consult the page for scaffold_1244 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMG9 ENSTTRG00000003334 (Bottlenosed dolphin)

Gene Details

SMG9 nonsense mediated mRNA decay factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003145, Bottlenosed dolphin)

Protein Percentage 78.83%
cDNA percentage 81.57%
Ka/Ks Ratio 0.36327 (Ka = 0.1629, Ks = 0.4483)

BT.22161 ENSBTAG00000011815 (Cow)

Gene Details

protein SMG9

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015684, Cow)

Protein Percentage 83.61%
cDNA percentage 83.67%
Ka/Ks Ratio 0.21311 (Ka = 0.1175, Ks = 0.5512)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1536 bp    Location:305623..324338   Strand:+
>bmy_15970
ATGCGCAGGGCCGGCAGCCCGCGAGACCTGATCTCGGTTCGGCCGCGCGAGATCTTCTCGACTTCTTCCTCCCTCGGACCGGCTTTCCTTCGGTGCCGCTTCCGGGATGCCCCCACCGGTTCTGGGTTGACCGGTACCCGTTCTCTCCCGCTACGCTCCCGGGTCCCCAGACTCCATTTGCAGGCCGGTGGCTTGCGGTGGAACCTCCTCGTCCCCACCCCACCCCCATCTCGGAGAGCGCGCGCCCCCTTGCACCCCAGGAACCAATCAGCAGCCGCCTTAGCAGAGCGGTCAAAGCAGCCACCGACTCCAACGGCCCCTGCCACCCCGCCTGCCCCAGCCCCTCTTGAGAAGCCCATTGTCCTCATGAAGCCACGGGAGGAGGGGAAAGGGCCTGCGGCCACAGCGAGTGCCTCCACCCCCGAGGGCACTGCCCCACCACCCCCTGCAGCCCCTGCGCCACCCAAGGGGGAGAAGGAGGGGCAGAGACCCACACAGCCTGTGTACCAGATCCAGAACCGGGGCATGGGGACTGCCGCGCCAGCAGCCATGGACCCYGTCGTGGGCCAGGCCAAACTGCTGCCCCCAGAGCGCATGAAGCACAGCATCAAGTTGGTGGATGACCAGATGAATTGGTGCGACAGTGCCATTGAGTACCTGTTGGATCAGACTGATGTCTTGGTGGTTGGTGTCCTGGGCCTCCAGGGGACAGGCAAGTCCATGGTTATGTCGTTGTTGTCAGCCAACACTCCTGAGGAGGACCAGAGGGCCTATGTCTTCCGGGCCCAGAGCGCCGAAATGAAGGAACGAGGGGGCAACCAGACCAGTGGCATTGACTTCTTTATTACCCAGGAGCGGATCGTTTTCCTGGACACGCAGCCCATCCTGAGCCCCTCCATCTTGGACCACCTCATCAACAACGACCGCAAGCTGCCTCCAGAGTACAGCCTGCCCCACACCTACGTAGAGATGCAGTCTCTCCAGATCGCGGCCTTCCTCTTCACGGTCTGCCACGTGGTGATTGTCGTCCAGGACTGGTTCACGGACCTCAGTCTGTACAGGTTCCTCCAGACAGCAGAGATGGTGAAGCCCTCCACCCCGTCCCCCAGCCATGAGTCCAGCAGCTCGTCAGGCTCCGATGAAGGCACTGAGTACTACCCTCACCTGGTCTTCCTGCAGAACAAAGCTCGCCGGGAGGACTTCTGCCCTCGGAAGCTGCGGCAGATGCACCTGATGATTGACCAGCTCATGGCCCACTCCCACCTGCGGTACAAGGGTACGCTGTCCATGTTACAGTGCAACGTCTTCCCTGGGCTCCCACCTGACTTCCTGGACTCCGAGGTCAATCTGTTCCTGATGCCCTTCATGGACAGCGAGGCAGAGAGTGAAACCCCCCCGAGAGCAGGTACGGTTCCGCCTCGAGAGGATCTGGTCCGTAGGGAGACACGGCCCACCTGGTTCCACTACGCCGCCCGGATCTGGGACGGGGTGAAAAAGTCCTCCGCCCTGGCAGAGTACAGCCGCCTGCTGGCCTGA

Related Sequences

bmy_15970T0 Protein

Length: 512 aa      View alignments
>bmy_15970T0
MRRAGSPRDLISVRPREIFSTSSSLGPAFLRCRFRDAPTGSGLTGTRSLPLRSRVPRLHLQAGGLRWNLLVPTPPPSRRARAPLHPRNQSAAALAERSKQPPTPTAPATPPAPAPLEKPIVLMKPREEGKGPAATASASTPEGTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYSLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLMPFMDSEAESETPPRAGTVPPREDLVRRETRPTWFHYAARIWDGVKKSSALAEYSRLLA*