Part of scaffold_1291 (Scaffold)

For more information consult the page for scaffold_1291 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF4B ENSTTRG00000012608 (Bottlenosed dolphin)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog B (yeast)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011963, Bottlenosed dolphin)

Protein Percentage 84.8%
cDNA percentage 84.74%
Ka/Ks Ratio 0.21874 (Ka = 0.0395, Ks = 0.1808)

PRPF4B ENSBTAG00000002086 (Cow)

Gene Details

Serine/threonine-protein kinase PRP4 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002695, Cow)

Protein Percentage 94.04%
cDNA percentage 89.71%
Ka/Ks Ratio 0.09745 (Ka = 0.0398, Ks = 0.4087)

PRPF4B  (Minke Whale)

Gene Details

pre-mRNA processing factor 4B

External Links

Gene match (Identifier: BACU005116, Minke Whale)

Protein Percentage 95.3%
cDNA percentage 94.83%
Ka/Ks Ratio 0.44502 (Ka = 0.0431, Ks = 0.0968)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1917 bp    Location:467012..509681   Strand:+
>bmy_16002
ATGATAGAAGGTCTAAGCAAAGCAAGTCACCTTCTCGAACTCTGTCTCCTGGTAGGAGAGCCAAGAGCCGATCCTTGGAAAGAAAACGCAGGGAGCCTGAACGGAGACGCCTTTCTTCGCCAAGGTAAAACACGACCTCGAGATGACATCCTCAGTAGGCGGGAAAGGTCAAAAGATGCCAGCCCAATCAGTAGGTGGTCTCCAGCCCGAAGAAGAGCCAGTAGATCTCCTGTTAGGAGGAGGTCCCGCTCCCCGCTCAGACGCAGCCGATCTCCCAGAAGAAGAAGCCGGTCTCCTCGGAGAAGGGACAGAGGTCGAAGGAGCAGGTCACGCCTGAGAAGGCGGTCTCGGTCACGGGGTGGTCGTAGACGTAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTGGAGCAGGAATCTTCATCTGATGATAACCTTGAAGACTTTGATGTTGAGGAGGAAGATGAAGAAGCCTTGATAGAACAGAGAAGAATACAAAGGCAGGCCATTGTTCAGAAATACAAATACCTTGCCGAGGACAGCAACATGTCCGTGCCCTCTGAGCCCAGCAGCCCCCAGAGCAGCACTCGCACCCGCTCTCCCTCTCCTGAGGACATTCTGGAAAGGGTAGCTGCCGACGTCAAGGAGTATGAACGGGAGAATGTTGATACGTTTGAGGCCTCAGTCAAAGCCAAGCATAATCTCATGACAGTCGAACAGAATAATGGTTCATCTCAGAAGAAGCTATTGGCACCCGATATGTTTACAGAATCTGATGATATGTTTGCTGCGTATTTTGATAGTGCGCGTCTGCGGGCTGCTGGCATTGGAAAAGATTTCAAAGAGAATCCCAACCTCAGGGATAACTGGACTGATGCAGAAGGCTATTATCGTGTGAACATAGGTGAAGTCCTGGATAAGCGTTATAACGTGTATGGCTACACGGGTCAAGGCGTGTTCAGTAACGTGGTCCGAGCCAGGGATAATGCRAGGGCCAACCAGGAGGTGGCCGTGAAGATCATTAGGAACAACGAGCTCATGCAAAAAACTGGTTTAAAAGAATTAGAATTCTTGAAAAAACTGAACGATGCTGATCCTGATGACAAATTTCATTGTTTGCGACTCTTCAGACACTTTTATCACAAACAGCATCTCTGCCTCGTGTTTGAGCCTCTGAGTATGAATTTACGAGAGGTGTTAAAAAAATATGGTAAGGATGTTGGCCTTCATATTAAGGCTGTACGATCCTATAGTCAGCAGTTGTTCTTGGCACTAAAACTCCTTAAAAGATGCAATATCCTCCATGCAGATATCAAGCCAGACAATATCTTGGTTAATGAATCAAAAACTATTTTAAAGCTCTGCGACTTCGGGTCGGCTTCACATGTTGCGGATAATGACATAACGCCTTACCTTGTCAGTAGATTTTATCGCGCTCCTGAAATCATTATAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCCGTAGGCTGCACCTTGTATGAACTCTATACTGGAAAGATTTTATTTCCTGGCAAAACCAATAACCATATGTTGAAGCTCGCCATGGATCTCAAAGGAAAGATGCCAAATAAGATGATTCGGAAAGGCGTATTTAAAGACCAACACTTTGATCAAAACCTCAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAAGTTACTGTCATGAGCACCATTAATCCAACTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGCGACTTCCTGAAGACCAGCGTAAAAAAGTGCACCAGCTGAAGGACTTGTTGGACCAGATCCTAATGTTGGACCCAGCTAAACGGATTAGCATCAACCAGGCCCTGCAGCACGCCTTCATCCAGGAGAAGATTTAA

Related Sequences

bmy_16002T0 Protein

Length: 639 aa      View alignments
>bmy_16002T0
MIEGLSKASHLLELCLLVGEPRADPWKENAGSLNGDAFLRQGKTRPRDDILSRRERSKDASPISRWSPARRRASRSPVRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPEDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSSQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI*