Part of scaffold_1295 (Scaffold)

For more information consult the page for scaffold_1295 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRCH4 ENSTTRG00000008894 (Bottlenosed dolphin)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008434, Bottlenosed dolphin)

Protein Percentage 97.2%
cDNA percentage 97.2%
Ka/Ks Ratio 0.19771 (Ka = 0.0148, Ks = 0.0747)

BT.91105 ENSBTAG00000003160 (Cow)

Gene Details

leucine-rich repeat and calponin homology domain-containing protein 4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037062, Cow)

Protein Percentage 84.6%
cDNA percentage 85.47%
Ka/Ks Ratio 0.28483 (Ka = 0.1067, Ks = 0.3746)

LRCH4  (Minke Whale)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 4

External Links

Gene match (Identifier: BACU012075, Minke Whale)

Protein Percentage 92.26%
cDNA percentage 93.09%
Ka/Ks Ratio 0.38821 (Ka = 0.0538, Ks = 0.1387)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2163 bp    Location:335267..323327   Strand:-
>bmy_16113
ATGGCGGCGGCGGTAGCGGCCTCTCTCGCCGCCGGGGGTGAGGAGGCGGCGACCACGACCTCCGTTCCAGGGTCTCCGGGTCTGCCCGGGAGCCGCAGTGCAGAGCGGGCCCTAGAGGAGGCCGTGGCCACCGGGACCCTGAACCTGTCTAACCGGCGTTTGAAGCACTTCCCCCGGGGCGCGGCCCGCAGCTACGACCTGTCAGACATCACCCAGGCTGACCTGTCCCGGAACCGGTTCCCCGAGGTGCCAGAGGCAGCGTGCCAGCTGGTGTCCCTGGAGGGTCTGAGCCTCTACCACAATTGTCTGAGGTGCCTGAACCCAGCCTTGGGGAATCTCACAGCTCTCACCTACCTCAACCTCAGCCGAAACCAGCTGTCATCGCTGCCGCCCTACATCTGCCAGCTGCCCCTGCGAGTGCTCATTGTCAGCAACAACAAACTGGGGGCCCTACCTCCCGACATCAGCGCCCTGGCAAGCCTGCGACAGCTCGATGCGAGCAGCAATGAGTTGCAGTCTCTCCCCGCGGAGCTGTGCGGCCTCCCTTCCCTGCGGGATCTCAATGTTCGGAGGAACCAGCTCAGCACCCTGCCTGATGAGCTGGGAGACCTTCCTCTCGTCCGCCTGGATTTCTCCTGTAACCGTGTCTCCCGCATCCCGGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTCATTTTGCTGGACAGCAACCCCCTGCAAAGCCCGCCTGCCCAGATCTGCCTGAAGGGGAAACTTCACATCTTCAAGTATTTGTCAACAGAGGCTGGGCGGCGCGGGGGGTCTGCACTGGGGGACCTGGCCCCTTCCCGCCCCCCGAGTTTCAGCCCCTGCCCCGCTGAGGACTTGTTTCCGGGACGTCGGTATGACGGAGGGCTGGACTCAGGCTTCCACAGCGTTGACAGTGGCAGCAAGAGGTGGTCTGGAAATGAGTCAACGGACGAATTTTCCGAGTTGTCGTTCCGGATCTCAGAGCTGGCCCGGGAGCCTCGGGGACCCAGGGAGCGGAGGGAGGATGGCTCTGCTGACGGAGACCCTGAGCAGGTTGACTTCATCGACAGCCACGTCCCTGGGGAGGACGAAGAGCGAGGTGCTGGCGAGGAGCAGCGGCCACCAGAATCGAGCCCTGTGGCAGGGGATGGGGAGAGGGCACCAAGCAGCAGACGGGAGGAGCCGTCAGGGGAGGAGAGGCGGCGCCCAGACACCTTGCAGCTGTGGCAGGAGCGCGAGCGGCGGCAGCAGCAGCAGCAGAGTGGCGTGTGGGGTTCCCCGAGGAAGGACAGTTTTCCGAAGCTGGGGGTCAGGGCTGCTGGCGGGGGTGCTGCCGCCTCGTCTGCTCAGGCCACCTACAAGTATGTGTGCTCCTGGACTCCGCCTCCCTCGGTCCTCGCCCTGCACCCCCTTCCCCTGAGCATCCCCCCCGACTCCCCTTCTGTCTCTCCTCAGCGGCACGCCCAAGTCCAATGCCACCCAGCTGGGAGCTTCGGGGGGGCAGGGTGCTCCCACCCCCGCCTCCACCACCCAGGAGCCCCTTCCTACAGCGGGACCAGGCAGAGGCAGGCGATGTGGGTGCCAGACCCTGCGACCCGGCTACAAAGTCGATGGTGCGTAGTGGAGGCGGCCCCATACCCTCCTCTGTCTCCAGGCCCTTCCTCACCGGACTCTGTCTTGAGACCTCGGCGATCCCCCCAGCTTCTGGACGAAAAGGAGGTGATGGCTCAGCTGCGCCAGGTGCTTGAGTCCCAGCTGCAGCGGCCCCTGCCCGAGGACCTGGCAGAGGCTCTAGCCAGTGGGGTCATCCTCTGTCAGCTGGCCAACCAGCTGCGGCCCCGCTCTGTGCCCTTCATTCACGTGCCCTCACCTGCTGTGCCAAAACTCAGTGCCCTCAAGTCTCGGAAGAATGTGGAGAGTTTCTTAGAAGCTTGTCGAAAAATGGGGGTTCCTGAGGCTGACCTGTGCTCGCCCTCGGATCTCCTCCAGGGCACTGCCCAGGGGCTGTGGACCACCCTGGAGGCTGTGAAGCGGGCGGGGGGCAGGTCCCCCCCGCCCCTCTGGCCCCCCTCTGGTCTGGGAGGCTTCATCCTCTTCTACGTGGTCCTCATGCTGCTGCTCTGTGTCGTCTACACTCGGCTCCTGGGTTCCTAG

Related Sequences

bmy_16113T0 Protein

Length: 721 aa      View alignments
>bmy_16113T0
MAAAVAASLAAGGEEAATTTSVPGSPGLPGSRSAERALEEAVATGTLNLSNRRLKHFPRGAARSYDLSDITQADLSRNRFPEVPEAACQLVSLEGLSLYHNCLRCLNPALGNLTALTYLNLSRNQLSSLPPYICQLPLRVLIVSNNKLGALPPDISALASLRQLDASSNELQSLPAELCGLPSLRDLNVRRNQLSTLPDELGDLPLVRLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQICLKGKLHIFKYLSTEAGRRGGSALGDLAPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTDEFSELSFRISELAREPRGPRERREDGSADGDPEQVDFIDSHVPGEDEERGAGEEQRPPESSPVAGDGERAPSSRREEPSGEERRRPDTLQLWQERERRQQQQQSGVWGSPRKDSFPKLGVRAAGGGAAASSAQATYKYVCSWTPPPSVLALHPLPLSIPPDSPSVSPQRHAQVQCHPAGSFGGAGCSHPRLHHPGAPSYSGTRQRQAMWVPDPATRLQSRWCVVEAAPYPPLSPGPSSPDSVLRPRRSPQLLDEKEVMAQLRQVLESQLQRPLPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMGVPEADLCSPSDLLQGTAQGLWTTLEAVKRAGGRSPPPLWPPSGLGGFILFYVVLMLLLCVVYTRLLGS*