Sequence details bmy_16187 (Coding sequence)

Part of scaffold_1266 (Scaffold)

For more information consult the page for scaffold_1266 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CSDE1 ENSTTRG00000015583 (Bottlenosed dolphin)

Gene Details

cold shock domain containing E1, RNA-binding

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014764, Bottlenosed dolphin)

Protein Percentage 98.23%
cDNA percentage 97.85%
Ka/Ks Ratio 0.22993 (Ka = 0.0126, Ks = 0.055)

BT.67516 ENSBTAG00000000678 (Cow)

Gene Details

cold shock domain-containing protein E1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000901, Cow)

Protein Percentage 97.45%
cDNA percentage 96.6%
Ka/Ks Ratio 0.16385 (Ka = 0.0165, Ks = 0.1006)

Additional orthologs identified in other species via the OPTIC pipeline.

CSDE1 (Human)  

Genome Location

Sequence Coding sequence

Length: 3261 bp    Location:136494..182921   Strand:+
Raw sequence 
>bmy_16187
ATGGAGGCTCCGACCGCAGCCAAGATGGAGGCAGGGGTGCGGGGCTCGGGCGCGGAGGCTGCTGGGAGTTGTAGTCTGGCTGCTTCCTCCTTTGCGGCTTGGTGGGGGAAACGAGAACTACAAGTCCCGGCGGGCGGGGCGAGGGGGTGGTGGCGCGGTCCTTTGTGTGAGACTGGAAGAGCTGGAGGCATAGGAGAGGGGCCTATTCTGACTCTGAACCCTGTGGTATCTTGGCCATCACCTGCTTGGGGATCTGACTACGAGTACCAGAGCGCAGTGCGGCAATGGCGCCTCCTTTGTGCCCGAAATAAAAGAGATGGTAGTGGTTTGAGTGATTTTGCAGCTGCTCTGGATGTTTACCATCGAGATGAACATTCCTCATCTGTTTATGGCAACAGCTCTAATGAGATGTCTCAACTTTCATCCTTTGAAACGTGTGCTGAAAAAGAAGAATCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGCTGTTTGAGATGGAGAACGTTTTTACTGTGTCATCAGATCCTCATCCCCCTCCTACAGCCCCTCCTTCACTTTCTTTACCTTTATCTTCATCTTCTACCTCATCTGGGACTAAAAAACAAAAGAGGACCCCCACGTATCAGAGATCTATGAGCTTTGATCCAAATCTTCTCCACAACAATGGGCATAATGGGTACCCCAATGGTACTTCAGCAGCACTGCGTGAAACTGGGGTTATTGAAAAACTGCTAACCTCTTATGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTTTTCTTCCACTGTTCACAGTATAATGGCAACCTGCAGGACTTAAAAGTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGGCGGACTGGGAAACCCATCGCTGTTAAACTGGTGAAGATAAAACAAGAAATCCTCCCTGAAGAACGAATTAATGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCCAGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGAAGTGTTTTATCTGACTTACACCCCTGAAGATGTTGAAGGGAACGTTCAGCTGGAAACTGGAGATAAAATAAACTTTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAATATTATGCTGTTGAAAAAGAAACAAGCTCGCTGTCAGGGAGTAGTTTGTGCCATGAAGGATGCGTTTGGCTTTATTGAAAGAGGTGATATTGTAAAGGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTGCAGCCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACTATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCGTTGCCAGGACGCATCAAAGTTGATTTTGTGATTCCTAAGGAACTTCCCTTTGGAGACAAAGATACGAAATCCAAGGTGACCCTGCTGGAAGGCGACCATGTTAGGTTTAATATTTCAACAGACCGTCGTGACAAATTAGAACGAGCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAAATGGGTGTAATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAGTAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACGGTTTCGTTCCACTCCCATTCAGATCATCGTTTTCTGGGCACCGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCAAATAAAGGCAAAGAAAAGGAGGCTGAGGATGGTATTATTGCTTATGATGATTGTGGGGTGAAATTGACTATTGCTTTTCAAGCCAAGGATGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTGCAACTTGTGTGCGACTCTTAGGTCGTAATTCCAACTCCAAGAGGCTCTTGGGTTATGTGGCAACTTTGAAGGATAATTTTGGATTTATTGAAACAGCCAATCATGATAAGGAAATCTTTTTCCATTACAGTGAGTTCTCTGGTGATGTTGATAGCCTGGAACTGGGGGACATGGTCGAGTACAGCTTGTCCAAAGGAAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAACAAAACACACTCAGTGAATGGCATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTCATTCGCCCCTTGAGGAGTGTCGATCCAACACAGACTGAGTACCAAGGAATGATTGAGATCATGGACGAAGGGGATATGAAAGGTGAGGTCTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAGAGCGTCAAGTTCCAGTTGTGTGTCCTGGGCCAAAATGCACAGACTATGGCCTACAACATCACACCCCTGCGTAGGGCCACAGTGGAATGTGTGAAAGATCAGTTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCTACAGGCAGGAGATGAGGTGGAATTCTCAGTGATTTTTAATCAGCGCACTGGCAACGAGGGCCCCAAGGCTGTTGCAGCTCCACGACCTGATAGGTTGGTCAATCGCTTGAAGAACATCACCCTGGATGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGTTTTCTGTTAATGGCGAAAGAATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTAGCACCTAGCGCTTTCATTATTAAAACGTCCTGTATGGGAGGGGCGGGTCTGGGTGCGGCCTGCCGCGTGACTCCTGGGTCGGAGGCCCACGTGGCCGGGGCGGGGACTCCGGCGCCTGGGGCGCCGACTGATTGCGTAGCGGGCGGGGCCGGAAGTGCCGCTCCCTGGTGGGGGCTGTTCATGGCGGTTCCGGGGTCTCCAACAGTTTTCCCGGTTGTGGTACAAATCTGTCCGAAGCGGAGGCAGTGGAGCTTGAGGTTCTTGCTGGTGTGA

Related Sequences

bmy_16187T0 Protein

Length: 1087 aa      View alignments
>bmy_16187T0
MEAPTAAKMEAGVRGSGAEAAGSCSLAASSFAAWWGKRELQVPAGGARGWWRGPLCETGRAGGIGEGPILTLNPVVSWPSPAWGSDYEYQSAVRQWRLLCARNKRDGSGLSDFAAALDVYHRDEHSSSVYGNSSNEMSQLSSFETCAEKEESANTTESAIFDYHCELFEMENVFTVSSDPHPPPTAPPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKDAFGFIERGDIVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIMDEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVIFNQRTGNEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMFSVNGERMEANKVLLIFETLAPSAFIIKTSCMGGAGLGAACRVTPGSEAHVAGAGTPAPGAPTDCVAGGAGSAAPWWGLFMAVPGSPTVFPVVVQICPKRRQWSLRFLLV*