Sequence detailsbmy_16299 (Coding sequence)

Part of scaffold_1294 (SequenceType object (1))

For more information consult the page for scaffold_1294 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MDC1ENSTTRG00000008332 (Bottlenosed dolphin)

Gene Details

mediator of DNA-damage checkpoint 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007893, Bottlenosed dolphin)

Protein Percentage 95.15%
cDNA percentage 97.33%
Ka/Ks Ratio 0.86822 (Ka = 0.0256, Ks = 0.0294)

MDC1ENSBTAG00000025526 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000035767, Cow)

Protein Percentage 78.06%
cDNA percentage 86.89%
Ka/Ks Ratio 0.69562 (Ka = 0.1326, Ks = 0.1906)

MDC1 (Minke Whale)

Gene Details

mediator of DNA-damage checkpoint 1

External Links

Gene match (Identifier: BACU015916, Minke Whale)

Protein Percentage 98.13%
cDNA percentage 98.81%
Ka/Ks Ratio 0.51496 (Ka = 0.0084, Ks = 0.0164)

Additional orthologs identified in other species via the OPTIC pipeline.

Mdc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 5310 bp    Location:234771..221558   Strand:-
Raw sequence 
>bmy_16299
ATGAGTCAGCGGACACCATGTCTGGGAGGACCGGGGAAGGACGCTCTGGCCGCACTAGATGCTTGGGGCGACGACTATGATAAGCCCCTCTATCCGTCGCTGGCGGCCAGACTCTGTGGTCGCGATTTGGAAATCTGCGCGGGAAGTGGGCGGTGCGGTGAAGCGGCAGTGGGTTGTCCTTTGGAGCTGCCCAATCGAGAGTTGGCGGCTTGCTCTGTCGGCGTGCAGCCGGGCTGTGAAAGACAGCGGCAGGAGCCAATCAGCGAATCGGCCCCCGCCCCGCTCAGGCACTTGCGCCATCCCGGTCGCGGCCGTTACTGGTGGCGCGCGCGGGGACTCAAAATCATGGAAGACACCCAGGTTATTAACTGGGAAGTTGAAGAAGAGGAGGAGGTTGAAGAGAGACCCAGTGAATCTTTGGGGTGTAGCTCGGAGCCCCTTGGGCGACTGCRTATCTTCAGTAGTTCCTATGGACCAGAAAAAGATTTCCCATTATACCTCGGGAAGAATGTGGTAGGCCGAATGCCTGATTGCTCTGTGGCCCTGCCCTATTCATCTATCTCCAAACAACATGCGGTGATTGAAATCTTGGCCTGGGACAAGGCGCCTGTCCTCCGGGATTGTGGGAGCCTCAATGGTACTCAAATCCTGAGGCCTCCTAAGGTCCTGSGCCCTGGGGTGAGTCATCGTTTGAGGGACCGGGAGTTGATTCTCTTTGCTGACTTGCCCTGCCAGTACCATCGCTTGGATGTCCCCCTGCCCTTTGTCTCCCGGGGCCCTCTAACTGTAGAGGAGACACCCAGGGTACAGGGAGGAACTCAACCCCACAGGCTTCTGTTGGCTGAGGACTCAGAGGAAGAAGTAGATTCTCTTTCTGAAAAGTGTGTGGTGAAAGGACCAAGGACCTCCTTTTTGGCAACAGTAGTTCCAGAGAGTGACACAGATGAGGAAGAAAGTCAGCAACCAGGAGCAGGGGAGGCCTCCTCAGCTGCCAGAAGAGTCACCGCTGCAGAGACAGAACAGCCTAAACCTGTCACAACTGAAATCCAGCTTGAAAAGGATCAGTGTTCAGTGAAGGAGAAGAACAATGACACGAAAGTTGAGAGGAATGCGAGGAGTGGGGTGGTTCCAGTTGGAGTGATTCTGGAGAGGAGCCAGCCTTCTGGGGAGGACAGTGACACAGACGTGGATGATGAGAGCGGGCCTCTGAGAAGGCTCACTGGGGTCCATCTGGAAAGGGCCCAGCCTTGTGGCTTCATAGACAGTGATACTGATGTGGAAGAAGAGGGGATCCCTGCGACCCCAGCAGTAGTTCCTGTGAGGAAGAGGCACATCTTCCATGAAGTTGGTACAGAGAGTCCTCGGGCACCTGGCGTGGCACATCGGCAGGAGAGCCCGGCTGGTAGTGATACAGATATAGAGGAGAGGGAGGCCCCCCTGACCATCCCTCTGGACAGAAGCCGAGCCTCCGTCGTGATCGATAGCAATACAGATGACAAGGAAGAAGTCTCAGCAGCGCTCACGCTGGCACATCTAAGAGAGAGCCGGGCCGTTGCGTGGAACAGAGATCCAGATGCAGAAGAGGATAGGGCCCAACCGGTGGCCCTTCTGGAGCAAAGCCAAGCCTCTGCTGGGAGAGACAGTGACACAGACGTGAAGGAAAAGGGGCTCCCAGTGGAGAAGACAGGAACTGTTCCCAGGGGTCACACGGGCAAGGCATATTCAGAAAAGAGTCAACTTCCTCTCAGGGACAGTGATACAGAGGTGATGGAAGAGRAGAGCTCACCGGGGTTCCACCTGCAGAGAAGCCAAGCCTCTGCCACAGTGCATGTCAACACACAAGTGGTGGAGGAAGTCCCACCAGGGCCAGCTGTTATACTTCTGGAGAAGCATCAAGTACCTGTAGCATGGACACATCAAACAGATGTGGAAGCTGAAGGAGGCCCAGCAAAGCTGCCTGTGGTGTATCTAGAAGAAGCCCAGCCTCCTCTAGCTGGGGACTGTGGCCCAGATGCGGAGGAGAACACATCCTTAGCAGCCTCAGCAGTGGCAGATGTAAGAAAGAGCCAGCTTCATGCAGAAGAAGATACTGGGACAGAGTGGGCTGCAGCCGTTCTTGAACAGGGCAGAGCTTTTATGGCTGGGGCCCAGGGTGGGTCACCCGCGGCCCAAGTGGAGCAGGACCTTCTCCCTGTCTCAAGGAATAACATAGCACATCTGGTGGTGGACACAGGCACTCCAGGGGAACCCACCCAGCCACAGAGAGAGGGGGCCCAGACCCCCACAGAAAGGGAGAGAGAACCACATGTGGATAGGACCATGGACTCTGGAGACAACCACGATGATTCTGAAGATCTGGACCTACAAGCTACCCAGTGCTTTGTGGAGAGAGAGAATCAGAGCCTGGAAGTCCCCAGCATGGAGGATGAACCCACCCAGGCCTTCCTGTTTACTCTGCCCCAAGAGCCTGGCCCTTCCCGTTGCAGCTTCCAGGCCACAGAGTCTGAAGCCTCTGAGACCCAGCCCATTGCCACCCACATTGAAGCCCATGGACCTTGCCCCTCTCCACCTACGGCAGCACCACAAGAGCAACATCCAGAGAGTCCAGTTCATGCAGAGCCACTGGGGATTCAAGGCAGAGGGGTGCAGACTGTGGAGGAAGACATGGGTACACCAAGAGAAACAGCAGAGAGGGTGACCCCTGAGAGAGGGCCATTGGAGAAGGAAACTGAGAAACTGCCCTCGGAAGGAGAGAGGGAAGATGTGATGGGAGAGGAAGAATCAACCAGGGGGATACAGGACAGAGAACAAAAACAGGTGTTAGCTAGAGATACTCAGAAACAAGAGTCTGACAAAAAAGTAAAAAGTGCAAGTACTGAAAGGGATATGGAGAGTTTGAAGGTAGAAATTGAGACACCCAAGGAAATACAAGAGAAAGAGAGAGAAAAGCAGACTCTTACAAGAGAAATATTTGACAGAGAAGCAGAGAAACCAGTAGCAGAGAGAGAGTGTGAGGCAGGTGGGTTAGAAGGGAAGGTACCCAAAGTGATGCTGGACAGAGGCCCACAGACAGGGGAGACAGAGGCGGGGGGCCAGGACCAGAAAGGCCAGGCCTCAGGTTCGACACCAGAGCCTGCAGCGGGGGCGGGAGACCTTCAGGGACTTGCTTCAGATCCCATAGCTTCTGGGAGCCAGTCAGGTGGAGGAAGGGGTGCCCCAGTGAGCCCCAGGAGGCAGCAGAGAGGCTACTTGAATTGTAAGATGCCACCTGCTGAGAAGGCTTCCAGGGGTGATCAGGAATCCCCAGCTGCTTGTCGGCCTCCGGCAGTGCAGGAAGCTTCCACGCCACTCCAGAACCCCCTCATCTCTCAGAGCCCCAAACGTCCTGCCCCTCAGTCCCTCCTTTCGCCCTCTCCACCTCCTTCAGAACCGCCCATTCCCAGGACCAGACAAAATGAGAGTCAGGAAGCTCTGGAGACTCCCTTTTCCTCAGAGCTGGACGCTCTCCACCCAAAACCCAAAGTCAAGCCCCAAGGGTCCTCTCCAGTTTCTTCTCCTGTCACCCCCAAACCCACATCTCGGGCCACTCGGGGCAGGACACAGAGGGCTTCTGTCAAGACTCCCGAACCAGTTATCTCCACAGCCCCTGAGCCCCAGCCTTCCACTTCCACAGACCAGCCTGTCACCCCCAAACCCACATCTCGGGCCACTCGGGGCAGGACACTCAGGTCCTCTGTCAAAACCCCTGAACGAAATGTCTCCACAGCTCCTGAGCTGCAGCCTTCTGCCCACACAGACCAGCCTGTCACCCCCAAACCCACATCTCAGGCCCCTCGGGGCAGGACACTTAGGTCTTCTGCTAAGACCCCTGAACCAGTTGTCCCCATAACTCCTGAGCCCCAGCCTTCCACCTCTAAAGACCAGTCTCTCACCCCTGAGCCCACATCTCAGGCCACTCGGGGCAGGACACATAGGTCCTCTGTCAAGACATCCCAGCCAACTGAACCCACAGCTCCTGACCTTGAACCTTCGTCCCCCACAGACCAGCCTGTCACCCCCAAAGTCATAGCTCAGGGTGGTCAGAGCAGGACACTAAGGTCTTCTACAGTAAGTGCTGTGCCAGTTCCTAACACCCCTGAATTCCACTCTCCAGTCCCCACAGAACAGCCTATTCCCCCTGAGCCCATCCCTGAAGCCAATTGCAGCAGGAGGCCAAGGGCCACTAGGAAACATGGGTCTCTCACAGCTCACGTTCATGAACCCTACTCTGCGCCCTCCGAACCTAACTCCCGGTCCTCAAGGAAGCAGAGACGAGGGGCGGTGAGAGCAGCCGAGTCCCTTAGCACCATTCCTGAGCCTGCCTTTGCCCAGCTTCCCGAGGCACCCACTCATGCTCCCCAGATCCCAAAGGGGGAGGCAGCAGATAGATCTGGCTTCACCCCAGAGCCCCAGCCTGAGGCCTCTCAAAATCACAAGAGGCCTTTAGCTACTGTGGACTCACCTCCACTTCAAAAACGGCTCCAAAGAGGAGAAGTTCCCCAGAAGACAGCATTCCTTAAGGAAGAAGAAGAAAATCCTGCAGCGAAGCTGAGGAAGGAMGAGGATGTAGTGATTCCAGGACCAGGCAAGAGAAAGAGAGAGCAGACAGAGGAGGAGCCCCGGGAAATACCGAGCCGCAGCCTGCGACGGACCAAACCTATCCAAGAGTCCACGGCCCCCAAAGTGCTCTTCACAGGCGTGGTAGATGCTCATGGAGAGCGGGCAGTGCTGGCCCTGGGGGGCAGTCTGGCCAGCTCAGTGGCTGAGGCTTCCCACCTGGTGACGGATCGGATCCGCCGAACAGTCAAGTTCCTGTGTGCCCTGGGGCGGGGCATCCCCATCCTCTCCCTGGACTGGCTGCACCAGTCCCGCAAGGCAGGTTGCTTCTTGCCCCCGGCTGAATATGTGGTGACTGATCCTGAGCAGGAGAAGAACTTTGGCTTCAGCCTTCGGGAGGCCCTGAGCCGGGCTCGGGAGCGAAGGCTGCTGGAGGGCTATGAGATTCACGTGACCCCAGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATCATCAGCTGCTGTGGAGGCACCGTCCTACCCAGCATGCCCCGGTCCTATAAGCCTCAGAGAGTTGTGATCACATGTTCCCAGGACTTCCCTCGATGTGCCATTCCATTTCGGGTTGGGCTGCCCATCCTCTCACCTGAGTTCCTGCTCACAGGAGTACTAAAGCAGGAAGCCAAGCCAGAGGCCTTTGTCCTCTCCACTTTGGAAATGTCATCCACCTGA

Related Sequences

bmy_16299T0 SequenceType object (3)

Length: 1770 aa      View alignments
>bmy_16299T0
MSQRTPCLGGPGKDALAALDAWGDDYDKPLYPSLAARLCGRDLEICAGSGRCGEAAVGCPLELPNRELAACSVGVQPGCERQRQEPISESAPAPLRHLRHPGRGRYWWRARGLKIMEDTQVINWEVEEEEEVEERPSESLGCSSEPLGRLXIFSSSYGPEKDFPLYLGKNVVGRMPDCSVALPYSSISKQHAVIEILAWDKAPVLRDCGSLNGTQILRPPKVLXPGVSHRLRDRELILFADLPCQYHRLDVPLPFVSRGPLTVEETPRVQGGTQPHRLLLAEDSEEEVDSLSEKCVVKGPRTSFLATVVPESDTDEEESQQPGAGEASSAARRVTAAETEQPKPVTTEIQLEKDQCSVKEKNNDTKVERNARSGVVPVGVILERSQPSGEDSDTDVDDESGPLRRLTGVHLERAQPCGFIDSDTDVEEEGIPATPAVVPVRKRHIFHEVGTESPRAPGVAHRQESPAGSDTDIEEREAPLTIPLDRSRASVVIDSNTDDKEEVSAALTLAHLRESRAVAWNRDPDAEEDRAQPVALLEQSQASAGRDSDTDVKEKGLPVEKTGTVPRGHTGKAYSEKSQLPLRDSDTEVMEEXSSPGFHLQRSQASATVHVNTQVVEEVPPGPAVILLEKHQVPVAWTHQTDVEAEGGPAKLPVVYLEEAQPPLAGDCGPDAEENTSLAASAVADVRKSQLHAEEDTGTEWAAAVLEQGRAFMAGAQGGSPAAQVEQDLLPVSRNNIAHLVVDTGTPGEPTQPQREGAQTPTEREREPHVDRTMDSGDNHDDSEDLDLQATQCFVERENQSLEVPSMEDEPTQAFLFTLPQEPGPSRCSFQATESEASETQPIATHIEAHGPCPSPPTAAPQEQHPESPVHAEPLGIQGRGVQTVEEDMGTPRETAERVTPERGPLEKETEKLPSEGEREDVMGEEESTRGIQDREQKQVLARDTQKQESDKKVKSASTERDMESLKVEIETPKEIQEKEREKQTLTREIFDREAEKPVAERECEAGGLEGKVPKVMLDRGPQTGETEAGGQDQKGQASGSTPEPAAGAGDLQGLASDPIASGSQSGGGRGAPVSPRRQQRGYLNCKMPPAEKASRGDQESPAACRPPAVQEASTPLQNPLISQSPKRPAPQSLLSPSPPPSEPPIPRTRQNESQEALETPFSSELDALHPKPKVKPQGSSPVSSPVTPKPTSRATRGRTQRASVKTPEPVISTAPEPQPSTSTDQPVTPKPTSRATRGRTLRSSVKTPERNVSTAPELQPSAHTDQPVTPKPTSQAPRGRTLRSSAKTPEPVVPITPEPQPSTSKDQSLTPEPTSQATRGRTHRSSVKTSQPTEPTAPDLEPSSPTDQPVTPKVIAQGGQSRTLRSSTVSAVPVPNTPEFHSPVPTEQPIPPEPIPEANCSRRPRATRKHGSLTAHVHEPYSAPSEPNSRSSRKQRRGAVRAAESLSTIPEPAFAQLPEAPTHAPQIPKGEAADRSGFTPEPQPEASQNHKRPLATVDSPPLQKRLQRGEVPQKTAFLKEEEENPAAKLRKXEDVVIPGPGKRKREQTEEEPREIPSRSLRRTKPIQESTAPKVLFTGVVDAHGERAVLALGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPAEYVVTDPEQEKNFGFSLREALSRARERRLLEGYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPRSYKPQRVVITCSQDFPRCAIPFRVGLPILSPEFLLTGVLKQEAKPEAFVLSTLEMSST*