Part of scaffold_1294 (Scaffold)

For more information consult the page for scaffold_1294 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VARS2 ENSTTRG00000012243 (Bottlenosed dolphin)

Gene Details

valyl-tRNA synthetase 2, mitochondrial

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011616, Bottlenosed dolphin)

Protein Percentage 87.14%
cDNA percentage 88.25%
Ka/Ks Ratio 0.45332 (Ka = 0.0293, Ks = 0.0647)

VARS2 ENSBTAG00000010698 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014160, Cow)

Protein Percentage 86.39%
cDNA percentage 88.43%
Ka/Ks Ratio 0.321 (Ka = 0.0862, Ks = 0.2685)

VARS2  (Minke Whale)

Gene Details

valyl-tRNA synthetase 2, mitochondrial

External Links

Gene match (Identifier: BACU015911, Minke Whale)

Protein Percentage 92.32%
cDNA percentage 94.28%
Ka/Ks Ratio 0.71982 (Ka = 0.0549, Ks = 0.0763)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2973 bp    Location:376157..387539   Strand:+
>bmy_16305
ATGCCTCATTTGCCTCTGGCCTCTTTTCGACCACCACTCTGGGGGTTGAGGCCCTCAAGGGGACTCCCCAGGTCCCATCCCCTTTCCACCCAGTCAGAGCCCAATGGATCAGCCATCTCGCAGAGGAACCGTGAAGCCAAACAGAAGCGCCTGCGACAGAAGCAGGCGGCGCTGGAGGCTGGAATCGCCCAGAAGACCAAGTCACCTGCAGAATCCAGTAAGGCCTGGACTCCTAAGGAGATAGTGTTGTATGAAATCCCCACGGAACATGGTGAAAAGAAAGATGTCTCCCGGCCCCTGCCTCCTGCATACAGTCCCCAGTATGTTGAGGCTGCCTGGTACCCTTGGTGGGTGCGAGAGGGCTTCTTCAAACCAGAATATCAGGCCAGGCTGCCCCAGGCCACACGGGAGACCTTTTCCATGTGTATCCCACCCCCCAATGTCACGGGCTCCCTGCATATTGGTCATGCGCTGACCGTAGCCATACAGGACGCCCTCGTGCGCTGGAAAGGTGGAGAGATCTGTGAGCAGCTCCGAGTGCTGGGGGCCTCCCTGGACTGGGACCGAGAGTGTTTTACCATGGATGCCGTGGAGAGCCGGCCCCTCGCTGGCTGCACGGAGCTTCGGTTGCCTGACTCCCCCACCCCTGTGTCTTTTGGCCTCCTCTTTTCCGTGGCCTTCCCCGTGGATGGAGAGCCTGATGCAGAAGTTGTGGTAGGAACCACGAGGCCAGAGACGTTGCCTGGAGACGTGGCTGTGGCYGTCCATCCCGATGACTCCCGATACACACATCTACATAGGCGACAACTTCGTCATCCCTTGACGGGGCAGCTTCTCCCCCTTATCACAGACTGTGCTGTTCAGCCACACCTGGGCACAGGGGCAGTGAAGGTGACTCCAGCTCACAGCCCTGCCGATGCTGAGCTGGGGGCCCGACACGGCTTGAGCCCCCTGAGTGTCATTGCGGAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCAGGGTCTTCACCGATTTGTGGCCCGGGAAAAGATTCTGTCGGCACTGAGGGAAGGGGGCCTGTTCCGGGGATTCCAGGACCACCCTATGGTGCTGCCCATTTGCAGGGACTGGTGTGTCTCCCGGCAGCTGTGGTGGGGTCATCAGATTCCAGCCTACCTGGTTGTAGAGGAGCACACACAGGTTGGTAGGAAGAAGCGGAAGGGAGGGCTGGGTGTGGCTGAAAGAGCCTTAGCACAGGAATCCGAGGACTTCCAGTGCTGGTCCCAGCTCCCTGCCTTTGCTGTGCTTTCTGGTCTTGGTCTCGGCGACACGAAGGACTGTTGGGTGGTCGGGCGGACAGAGGCTGAGGCCAGAGAAGTAGCTGCAGAATTGACAGGGAGACCAGGGGCGGAGCTGATCCTGGAGAGGGACCCCGATGTCCTGGATACCTGGTTCTCCTCGGCTCTTTTCCCCTTTTCTGCCCTGGGCTGGCCCCAAGAGACCCCAGACCTGGCTCATTTCTACCCCCTGTCACTTTTGGAAACGGGCAGTGACCTCTTGCTGTTCTGGGTGGGCCGCATGGTCATGTTGGGGACCCAGCTTACAGGGCAGCTCCCCTTCAGCAAGGTGTTGCTGCACTCCATGGTTCGGGACAGGCAGGGCCGGAAGATGAGCAAGTCGCTGGGGAATGTGCTGGACCCACGGGACATCATCAGTGGGGTGGAACTGCAGGTGCTGCAGGAGAAGCTGAGGGATGGGAACTTGGACCCCGCAGAGCTGGTGATCGCGGCCTCAGCACAGAGAAAGGACTTCCCTCATGGGATCCCCGAGTGTGGGACAGATGCCCTGAGATTCGCCCTGTGCTCCCATGGGGCCCTGGGTAAGCCCGGGCGAGGGCAGCCGGCAGTGGCCCCTGTGCGGTGGGGCAGGGCAGGGCAGGGCCAAGGACTCCCCGTGCAGCCACCACCAGTGCACGCTCCCTCCTGTCTCTCCCTCCCAGGGGGCGACTTGCACCTGTCTGTCTCTGAGGTCCTGAGCTTCAGACATTTCTGCAATAAGATCTGGAATGCCCTGCGCTTTGTCCTGAATGCTCTTGGGGAGAAATTCATACCCCAGCCTGCAGAGGAGCTGTCCCCCGCCTCCCCCATGGACGCCTGGATCCTCAGCTGCCTGGCCCGCACTGCCCGGGACTGTGAGCGGGGCTTCCTCACCTGCGAGCTCGCGCTCGTCACCCACGCCCTGCACCACTTCTGGCTTCACAACCTCTGTGATGTCTACTTGGAGGCTGTGAAGCCGGTGCTGTTGCACTTGCCCCACCCCCCGGGGCCTCTTCAGGTCCTGTTCTCCTGCGCTGACGTCGGTCTCCGCCTCCTCGCCCCGCTGATGCCCTTCCTGGCTGAAGAGCTCTGGCAGAGGCTGCCGCCCAGGCCTGGTGGCGCCCCTGCCCCCAGCATCTGTGTTGCCCCCTACCCCAGTGCCCGCAGCTTGGAGCACTGGCACCAGCCCGAGCTGGAGCGGCACTTCTCCCGGGTCCAGGAGGCTGTGCAGGCGCTGAGGGCTCTCCGCGCCACGTACCAGCTCACCAAGGCCCGGCCCCGAGTGCTGCTGCAGAGCTCAGAGCCAGGAGACCAGGGCCTCTTTGAGGCCTTCCTGGAGCCCCTGGGCACCCTGGGCCACTGTGGGGCCGTGGGCCTTCTACCCCCAGCTGCAGCAGCTCCCTCGGGCTGGGCCCAGGCCCCTCTCAGTGACACCGTTCAGGTCTACATGGAGCTGCAGGGCCTGGTGGACCCCCAGACCCACCTACCTCGGCTAGCTGCCCGAAGACACAAGTTGCAGAAGCAGCTTGATGGCCTCATAGCCCGGACCCCATCAGAGGGAGAGGCAGAGACTCAGAGGCAGCAGAGGTTGGAATTGTCAAAACTGGACAAGGCGGCCTCTCACCTCCGGCACTTGATGGATGTGTCTCCCAGCCCTGGGGAGCTTTGA

Related Sequences

bmy_16305T0 Protein

Length: 991 aa      View alignments
>bmy_16305T0
MPHLPLASFRPPLWGLRPSRGLPRSHPLSTQSEPNGSAISQRNREAKQKRLRQKQAALEAGIAQKTKSPAESSKAWTPKEIVLYEIPTEHGEKKDVSRPLPPAYSPQYVEAAWYPWWVREGFFKPEYQARLPQATRETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWKGGEICEQLRVLGASLDWDRECFTMDAVESRPLAGCTELRLPDSPTPVSFGLLFSVAFPVDGEPDAEVVVGTTRPETLPGDVAVAVHPDDSRYTHLHRRQLRHPLTGQLLPLITDCAVQPHLGTGAVKVTPAHSPADAELGARHGLSPLSVIAEDGTMTSLCGDWLQGLHRFVAREKILSALREGGLFRGFQDHPMVLPICRDWCVSRQLWWGHQIPAYLVVEEHTQVGRKKRKGGLGVAERALAQESEDFQCWSQLPAFAVLSGLGLGDTKDCWVVGRTEAEAREVAAELTGRPGAELILERDPDVLDTWFSSALFPFSALGWPQETPDLAHFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFSKVLLHSMVRDRQGRKMSKSLGNVLDPRDIISGVELQVLQEKLRDGNLDPAELVIAASAQRKDFPHGIPECGTDALRFALCSHGALGKPGRGQPAVAPVRWGRAGQGQGLPVQPPPVHAPSCLSLPGGDLHLSVSEVLSFRHFCNKIWNALRFVLNALGEKFIPQPAEELSPASPMDAWILSCLARTARDCERGFLTCELALVTHALHHFWLHNLCDVYLEAVKPVLLHLPHPPGPLQVLFSCADVGLRLLAPLMPFLAEELWQRLPPRPGGAPAPSICVAPYPSARSLEHWHQPELERHFSRVQEAVQALRALRATYQLTKARPRVLLQSSEPGDQGLFEAFLEPLGTLGHCGAVGLLPPAAAAPSGWAQAPLSDTVQVYMELQGLVDPQTHLPRLAARRHKLQKQLDGLIARTPSEGEAETQRQQRLELSKLDKAASHLRHLMDVSPSPGEL*