Part of scaffold_1294 (Scaffold)

For more information consult the page for scaffold_1294 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCHCR1 ENSTTRG00000006529 (Bottlenosed dolphin)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006181, Bottlenosed dolphin)

Protein Percentage 88.64%
cDNA percentage 90.64%
Ka/Ks Ratio 0.42753 (Ka = 0.0271, Ks = 0.0634)

BT.25908 ENSBTAG00000014434 (Cow)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000019198, Cow)

Protein Percentage 93.14%
cDNA percentage 92.9%
Ka/Ks Ratio 0.15596 (Ka = 0.0354, Ks = 0.2271)

CCHCR1  (Minke Whale)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene match (Identifier: BACU015907, Minke Whale)

Protein Percentage 95.05%
cDNA percentage 96.09%
Ka/Ks Ratio 0.41644 (Ka = 0.0314, Ks = 0.0755)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2304 bp    Location:544351..530340   Strand:-
>bmy_16312
ATGTTTCGACCTTCAGGTTCCACTGGGCTGATTCCCCCATCCCACTTCCAAGTTCGGCCCCTTCCAACTCTGCCAAGAATGGCTCCCACGTGGGTCTCAGACATTCCCCTGGTTCAGCCCCCAGCCCATCAAGATGTCTTAGAGAGGCGGCCAGATAACCAGAGACCTCAAGTGACCATGTGGGAACAGGAAGTTTCTGGCAAAGGGCAGGAGCCAGGGTGGAGAGGCAGGTCCGTGGAGCTGGCGGGGTCGCAGGCCCTGAGCCAGCAGGCTGAGCTGATCTCTCGGCAGCTGCGAGAGCTGCGGCGGCTCGAGGAGGAGGTCCGGGTGCTGCGGGAGACCTCGCTGCAGCAGAAGATGAGGCTGGAGGCCCAGGCCATGGAGCTGGAGGCACTGGCACGGGCAGAGAAGGCTGGCCGCACTGAGGCCGAGGGCCTGCGTGCTGCCCTGGCCGGGGCCGAGGTTGTCCGGAAGAACCTGGAAGAAGGGAGCCAGCGGGAGCTGGAGGAGGTTCAGAAGCTGCACCAAGAGCAGCTCTCCTCCTTGACACAGGCTCACCGGGAGGCTCTTTCCAGTTTGACTAGCAAAGCTGGGGGCCTGGAGAAGTCTCTGAGTAGTCTGGAAACCAGGAGGTCAGGAGAAGCCGAGGAGCTGGCTGCGGCCCAGAGGGAGGCCGAGCTGCTGCGGAAGCAGCTGAGGAAGACCCAAGAGGATTTAGAGGCTCAGGTGACCTTGGTTGAGAACCTAAGGAGGTACGTGGGGGAGCAGGTCCCTCCCGAGGTCCACAGTCGGATGTGGGAATCAGAGCGACAGGAGCTTCTAGAAACCGTGCAGCACCTGCGGGAGGACCAGGCCGGCCTGCACACCACCGCGGAGCTGCTGCAGGTGCGCGTGCAGAGCCTCACGCACATCCTCTGCATGCAGGAGGAGGAGCTGGCCCGGAGGGTTCAGCCTTCAGACTGCCTGGAGCCCGAGTTCACCGAGAAGTGCCAGTCCCTGCTGAAGCGCTGGCGGGAGAAGGTGTTTGCCCTTTTGGTGCAGCTGAAGGCCCAGGAGCTGGAGCACAGAGAATGCGTGGAGCAGCTGAAGGGACAGGTGGCAGAGCTCCAGGAAGGAGTCAAAACCCAGTGCCAGGAGCAGGCCATCCTGCAGCGCTCCCTGCAGGACAAAGCTGCAGAAGTGGAGGTAGAGCGGATGGGTGCCAAGGAGGCCCGGCGCCGGGAGCAGCAGCAGACAGCCACAGCGGAAGAGCAGCTGAAGCTTGTGGCCAATGCTGTCAGCAGCTTTCAGACCTGGCTCCAGAGTGCCATGGCAGAGGTGAAGCAGGCCGCAGCCCGGTTGCCCGGCCTCAGCAGCCGAGTCAGCTATGCCGTCCGCAAGGTCCACACCATTCAGGGCCTGATGGCTCGAAAACTGGCCCTTGCTCAGCTGCGCCAGGAGAGCTGCCCCCGACCCCCACCGGCCACGGATATGAGCCTGGAGCTGGAGCAGCTGCGGGAGGAACGGAACCGTCTGGACGCAGAACTGCAGCTGAGCGCCCACATCATCCAGCAGGAGGTGGGCCGGGCCCGGGAGCAAGGGGAGGCGGAGCGGCAGAAGCTGAGCGAAGTGGCCCAGCAGCTGGAGCAGGAGCTGCAGCGCACCCAGGAGTCCCTGGCCACTTTGGGGCTGCAGCTGGAGGCGGCTCGCCAGGGCCAGCAGGAGAGCACGGCGGAGGCTGCCAGTCTCCGGCAGGAGCTGACCCAGCAGCAGGAGATCTACGGGCAAGCGCTGCAGGAGAAGGTGGCCGAAGTGGAGACTCGACTGCGGGAGCAGCTCTCAGAATCAGAAAGGAGACTGAACGAGGCTCGCAGGGAACACACCAAGGCCGTGGTCTCCCTGCGCCAGATCCAGCGCAAAGCCACCCGGGAAAAGGAGCGGAACCAGGAGCTGCGGCGCCTGCAGGATGAGGCCCGAAAGGAGGAGGGACAGCGGCTGACCCAGCGCCTGAAGGAGCTGGAGAGAGACAAGAACCTCATGCTGGCCACCTTGCAGCAAGAGGGTCTCCTCTCCCGTTACAAGCAGCAGCGACTGTTGGCAGTTCTTCCTTCCCCATCGGATAAGGGGTTACCTGTGGAGTCCAGCCCCAGGCCCTCAGAGTCTTCAGCGCCTGCACCTCCGGCAGCGGCCCTATGCACCAAGGAGTCCATCAAAGGATCCCTTTCTGTCCTGCTCGATGACTTGCAGGGCCTGAGTGAGGCCATTTCCAAAGAGGAAGCTATTTGTGAAGGAGACAGCCAGACCTCTTCTTCTGTCTGCCACTGA

Related Sequences

bmy_16312T0 Protein

Length: 768 aa      View alignments
>bmy_16312T0
MFRPSGSTGLIPPSHFQVRPLPTLPRMAPTWVSDIPLVQPPAHQDVLERRPDNQRPQVTMWEQEVSGKGQEPGWRGRSVELAGSQALSQQAELISRQLRELRRLEEEVRVLRETSLQQKMRLEAQAMELEALARAEKAGRTEAEGLRAALAGAEVVRKNLEEGSQRELEEVQKLHQEQLSSLTQAHREALSSLTSKAGGLEKSLSSLETRRSGEAEELAAAQREAELLRKQLRKTQEDLEAQVTLVENLRRYVGEQVPPEVHSRMWESERQELLETVQHLREDQAGLHTTAELLQVRVQSLTHILCMQEEELARRVQPSDCLEPEFTEKCQSLLKRWREKVFALLVQLKAQELEHRECVEQLKGQVAELQEGVKTQCQEQAILQRSLQDKAAEVEVERMGAKEARRREQQQTATAEEQLKLVANAVSSFQTWLQSAMAEVKQAAARLPGLSSRVSYAVRKVHTIQGLMARKLALAQLRQESCPRPPPATDMSLELEQLREERNRLDAELQLSAHIIQQEVGRAREQGEAERQKLSEVAQQLEQELQRTQESLATLGLQLEAARQGQQESTAEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSESERRLNEARREHTKAVVSLRQIQRKATREKERNQELRRLQDEARKEEGQRLTQRLKELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSPSDKGLPVESSPRPSESSAPAPPAAALCTKESIKGSLSVLLDDLQGLSEAISKEEAICEGDSQTSSSVCH*