Part of scaffold_1294 (Scaffold)

For more information consult the page for scaffold_1294 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000006542 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006189, Bottlenosed dolphin)

Protein Percentage 79.11%
cDNA percentage 79.7%
Ka/Ks Ratio 0.27532 (Ka = 0.0054, Ks = 0.0195)

BT.92603 ENSBTAG00000021111 (Cow)

Gene Details

POU domain, class 5, transcription factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000028122, Cow)

Protein Percentage 97.11%
cDNA percentage 95.28%
Ka/Ks Ratio 0.07117 (Ka = 0.0119, Ks = 0.1678)

POU5F1  (Minke Whale)

Gene Details

POU class 5 homeobox 1

External Links

Gene match (Identifier: BACU019192, Minke Whale)

Protein Percentage 82.22%
cDNA percentage 85.48%
Ka/Ks Ratio 0.76493 (Ka = 0.1539, Ks = 0.2012)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1041 bp    Location:554733..549993   Strand:-
>bmy_16314
ATGGCGGGACACCTGGCTTCCGACTTCGCCTTCTCGCCCCCGCCGGGCGGTGGAGGCGATGGGCCGGGAGGGCCAGAGCCGGGCTGGGTTGATCCTCGGACCTGGATGAGCTTCCAAGGGCCTCCCGGTGGGTCAGGGATCGGGCCGGGGGTTGGGCCCGGCGCCGAGGTGTGGGGTCTTCCCGCGTGCCCCCCGCCCTATGACTTCTGCGGAGGGATGGCCTACTGTGCACCTCAGGTTGGAGTGGGGCTGGTGCCCCAAGGCGGCCTGGAGACCCCTCAGCCCGAGGGCGAGGCGGGAGCCGGGGTGGAGAGCAACTCCGAGGGGGCCTCCCCGGAGCCCTGCGCCGCCCCCGCTGGCTCCTCCCAGGACATCAAAGCTCTTCAGAAAGACCTTGAACAATTTGCCAAGCTCCTAAAGCAGAAGAGGATCACCCTGGGATATACCCAGGCCGATGTGGGGCTCACCCTGGGGGTTCTCTTTGGGAAGGTGTTCAGCCAAACGACCATCTGCCGTTTTGAGGCTTTGCAGCTCAGTTTCAAGAACATGTGTAAGCTGCGGCCCCTGCTGCAGAAGTGGGTGGAGGAAGCTGACAACAACGAGAATCTGCAGGAGATATGCAAGGCAGAGACCCTCGTGCAGGCCCGGAAGAGAAAGCGGACGAGTATTGAGAACCGAGTGAGAGGCAACCTGGAGAGCATGTTCCTGCAGTGCCCAAAGCCCACCCTGCAGCAGATCAGCCACATCGCTCAGCAGCTCGGGCTTGAGAAGGATGTGGTCCGAGTGTGGTTCTGCAACCGTCGCCAGAAGGGCAAACGATCAAGCAGTGACTATTCGCAACGAGAGGATTTTGAGGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTATCCTTTCCTCTGGCGCCARGGCCCCATTTTGGTACCCCAGGCTATGGGGGTCCTCATTTCACTACGCTGTACTCCTCAGTCCCATTTCCTGAGGGTGAGGCCTTTCCCTCGGTGTCTGTCACCACTCTGGGCTCCCCCATGCATTCAAATTGA

Related Sequences

bmy_16314T0 Protein

Length: 347 aa     
>bmy_16314T0
MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWMSFQGPPGGSGIGPGVGPGAEVWGLPACPPPYDFCGGMAYCAPQVGVGLVPQGGLETPQPEGEAGAGVESNSEGASPEPCAAPAGSSQDIKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLESMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYSQREDFEAAGSPFSGGPVSFPLAPXPHFGTPGYGGPHFTTLYSSVPFPEGEAFPSVSVTTLGSPMHSN*