Sequence details bmy_16341 (Coding sequence)

Part of scaffold_1300 (Scaffold)

For more information consult the page for scaffold_1300 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYCN ENSTTRG00000014977 (Bottlenosed dolphin)

Gene Details

syncollin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014193, Bottlenosed dolphin)

Protein Percentage 81.34%
cDNA percentage 91.04%
Ka/Ks Ratio 0.77635 (Ka = 0.0959, Ks = 0.1235)

SYCN ENSBTAG00000045930 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053877, Cow)

Protein Percentage 76.87%
cDNA percentage 86.07%
Ka/Ks Ratio 0.21351 (Ka = 0.1219, Ks = 0.5708)

SYCN  (Minke Whale)

Gene Details

syncollin

External Links

Gene match (Identifier: BACU008324, Minke Whale)

Protein Percentage 84.34%
cDNA percentage 89.56%
Ka/Ks Ratio 0.26248 (Ka = 0.0869, Ks = 0.3311)

Additional orthologs identified in other species via the OPTIC pipeline.

SYCN (Human)   Sycn (Mouse)  

Genome Location

Sequence Coding sequence

Length: 423 bp    Location:313568..313146   Strand:-
Raw sequence 
>bmy_16341
ATGTCCCCTCTGTGCTCACTGTTGCTGGCCTTGGCCCTGGCGGCCGTCCCCGGCGTCCGAGGCGCCTGCCCGCAGCCCGCCGACCTCAAGAACGCCAACGGGACGCGCATGTGCGCCAAGCTCTACGACAAGAGCGACCCCTACTACGAGCGCTGCTGCGGCGGCGCCGAGCTGTCGGTGCAGCCGGGCACCGACATGCCCTACCTGCCCTCTGGCTGGCGGAACGTCGCCTCGTCCCTCGTGGTGGGCCAGCGCTGCGACCTCGTCGTGTGGTCCTCTCGCGGCAAGGCCGGCAAGAAGCGCAAATTCTCGTCCGGCACCTACCCGCGCCTGGAAGAGTACCGCCGCGGCATCTTCGGGGACTGGTCCAACTCCATCTCCTCGCTCTACTGCAGGTGCCCGCCCGCTGGCCCGCGCCCGTAG

Related Sequences

bmy_16341T0 Protein

Length: 141 aa      View alignments
>bmy_16341T0
MSPLCSLLLALALAAVPGVRGACPQPADLKNANGTRMCAKLYDKSDPYYERCCGGAELSVQPGTDMPYLPSGWRNVASSLVVGQRCDLVVWSSRGKAGKKRKFSSGTYPRLEEYRRGIFGDWSNSISSLYCRCPPAGPRP*