Sequence detailsbmy_16341 (Coding sequence)

Part of scaffold_1300 (SequenceType object (1))

For more information consult the page for scaffold_1300 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYCNENSTTRG00000014977 (Bottlenosed dolphin)

Gene Details

syncollin

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014193, Bottlenosed dolphin)

Protein Percentage 81.34%
cDNA percentage 91.04%
Ka/Ks Ratio 0.77635 (Ka = 0.0959, Ks = 0.1235)

SYCNENSBTAG00000045930 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053877, Cow)

Protein Percentage 76.87%
cDNA percentage 86.07%
Ka/Ks Ratio 0.21351 (Ka = 0.1219, Ks = 0.5708)

SYCN (Minke Whale)

Gene Details

syncollin

External Links

Gene match (Identifier: BACU008324, Minke Whale)

Protein Percentage 84.34%
cDNA percentage 89.56%
Ka/Ks Ratio 0.26248 (Ka = 0.0869, Ks = 0.3311)

Additional orthologs identified in other species via the OPTIC pipeline.

SYCN (Human)   Sycn (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 423 bp    Location:313568..313146   Strand:-
Raw sequence 
>bmy_16341
ATGTCCCCTCTGTGCTCACTGTTGCTGGCCTTGGCCCTGGCGGCCGTCCCCGGCGTCCGAGGCGCCTGCCCGCAGCCCGCCGACCTCAAGAACGCCAACGGGACGCGCATGTGCGCCAAGCTCTACGACAAGAGCGACCCCTACTACGAGCGCTGCTGCGGCGGCGCCGAGCTGTCGGTGCAGCCGGGCACCGACATGCCCTACCTGCCCTCTGGCTGGCGGAACGTCGCCTCGTCCCTCGTGGTGGGCCAGCGCTGCGACCTCGTCGTGTGGTCCTCTCGCGGCAAGGCCGGCAAGAAGCGCAAATTCTCGTCCGGCACCTACCCGCGCCTGGAAGAGTACCGCCGCGGCATCTTCGGGGACTGGTCCAACTCCATCTCCTCGCTCTACTGCAGGTGCCCGCCCGCTGGCCCGCGCCCGTAG

Related Sequences

bmy_16341T0 SequenceType object (3)

Length: 141 aa      View alignments
>bmy_16341T0
MSPLCSLLLALALAAVPGVRGACPQPADLKNANGTRMCAKLYDKSDPYYERCCGGAELSVQPGTDMPYLPSGWRNVASSLVVGQRCDLVVWSSRGKAGKKRKFSSGTYPRLEEYRRGIFGDWSNSISSLYCRCPPAGPRP*