Sequence detailsbmy_16395 (Coding sequence)

Part of scaffold_1325 (SequenceType object (1))

For more information consult the page for scaffold_1325 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VLDLRENSTTRG00000007358 (Bottlenosed dolphin)

Gene Details

very low density lipoprotein receptor

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006963, Bottlenosed dolphin)

Protein Percentage 93.84%
cDNA percentage 93.25%
Ka/Ks Ratio 0.12249 (Ka = 0.0067, Ks = 0.0546)

VLDLRENSBTAG00000018517 (Cow)

Gene Details

very low-density lipoprotein receptor precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000044478, Cow)

Protein Percentage 95.23%
cDNA percentage 92.56%
Ka/Ks Ratio 0.13073 (Ka = 0.032, Ks = 0.2449)

VLDLR (Minke Whale)

Gene Details

very low density lipoprotein receptor

External Links

Gene match (Identifier: BACU019300, Minke Whale)

Protein Percentage 99.88%
cDNA percentage 99.33%
Ka/Ks Ratio 0.03161 (Ka = 0.0006, Ks = 0.0193)

Additional orthologs identified in other species via the OPTIC pipeline.

VLDLR (Human)   Vldlr (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2607 bp    Location:165255..184428   Strand:+
Raw sequence 
>bmy_16395
GTAACTGGCATCTCTAACTTACCATCCTTGTGTCCCAGCTTAGCTAAGTGTTCCCTCCTGATTTTAGGAAGAAAAGCCAAATGTGAACCCTCCCAATTCCAGTGCACAAATGGCCGCTGTATTACGCTGCTGTGGAAATGCGATGGGGACGAAGACTGTGCTGATGGCAGTGACGAAAAGAACTGTGTGAAGAAGACGTGTGCCGAGTCTGACTTTGTGTGCAACAATGGCCAGTGTGTTCCCAACCGATGGCAGTGTGATGGGGATCCCGACTGTGAAGATGGTTCTGATGAAAGCCCGGAGCAGTGCCATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCCACTCAGTGTATCCCAGTGTCCTGGAGATGTGATGGTGAAAATGATTGTGACAGTGGAGAAGATGAAGAAAACTGTGGCAACATAACGTGCAGCCCTGATGAGTTCACTTGCTCCAGTGGCCGCTGCATCTCCAGGAATTTCGTGTGCAATGGCCAGGATGACTGTAGCGACGGCAGCGACGAGCTTGACTGCACCCCACCCACCTGCGGGGCCCACGAGTTCCAGTGCAGCACCTCCTCCTGCATCCCCATCAGCTGGGTGTGCGATGACGACGCAGACTGCTCGGACCAGTCAGATGAGTCCCTCGAGCAGTGTGGCCGCCAGCCGGTGATCCACACCAAGTGCCCAGCCAGCGAGATCCAGTGCGGCTCTGGCGAGTGCATCCACAAGAAGTGGCGATGTGACGGGGATCCTGATTGCAAGGATGGCAGCGATGAGGTCAACTGTCCTTCCCGAACCTGCCAACCTGACCAGTTTGAGTGCGAGGATGGTAGCTGCATCCACGGCAGCAGGCAGTGTAACGGCATCCGAGACTGTGTCGACGGTTCTGATGAAGTCAACTGCAAAAATGTCAATCAGTGCTTGGGCCCTGGGAAATTCAAGTGCAGAAGCGGGGAGTGCATAGATATCAGTAAAGTGTGTAACCAGGAGCAGGACTGCAGGGACTGGAGTGATGAGCCCCTGAAAGAATGTCATGTAAATGAATGCTTGGTTAATAATGGCGGATGCTCCCATATCTGCAAAGACCTAGTTATAGGCTACGAATGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGATATTGACGAATGCCAAAATCCGGGAATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGGCAAAGAGCCAAGTCTGATCTTCACTAATAGACGAGACATCAGGAAGATTGGCTTGGAGAGGAAAGAATATATCCAACTAGTTGAACAGCTAAGAAACACTGTGGCTCTCGATGCTGACATTGCTGCTCAGAAACTATTCTGGGCTGATCTAAGCCAAAAGGCCATCTTCAGTGCCTCAATTGATGACAAGGTTGGTAGACATGTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGATGGAACCAAGAGGAAGTTCCTGTTTAACTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGACCCGCTGTCTGGCTTTGTTTACTGGTCAGACTGGGGTGAACCAGCTAAAATCGAAAAAGCAGGAATGAATGGATTTGATAGACGGGCGCTGGTGACAGCGGACATTCAGTGGCCTAACGGAATTACACTCGACCTCATAAAGGGCCGCCTCTATTGGCTGGATTCCAAATTGCACATGTTATCCAGTGTGGACTTGAACGGCCAAGATCGCAGGATAGTCCTAAAGTCTCTGGAATTCCTAGCTCATCCCCTCGCACTCACAATATTTGAGGATCGTGTCTACTGGATAGATGGGGAAAATGAAGCCGTCTATGGCGCCAATAAATTCACTGGATCGGAGCTGGCCACTCTAGTTAACAACCTTAATGATGCCCAAGACATCATCATCTATCATGCACTTGTACAGCCATCAGGTAAAAATTGGTGCGAAGAAGACATGGAGAATGGAGGATGTGAATACCTCTGCCTGCCAGCCCCACAGATTAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGATACAATCTAGAGGACAATGGCCGAGAGTGCCAAAGTACTGCAACTACTGTGACTTACAGTGAGACAAAAGATACCAACACAACAGAAATGTCACCAACTAGTGGACTAGCTCCTGGAGAGATCAATGTGACCACAGCAGTATCGGAGGTCAGTGTTCCCCCAAAAGGGACTTCTGCTGCCTGGGCCATCCTTCCCCTCTTGCTCTTAGCAATGGCAGCAGTAGGTGGCTACTTGATGTGGCGGAATTGGCAACACAAGAACATGAAAAGCATGAACTTTGATAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCAATAGACATCGGTAGACACAGTGCTTCTGTCGGACACACGTACCCAGCAATATCCGTTGTAAGCACAGACGATGATCTAGCTTGA

Related Sequences

bmy_16395T0 SequenceType object (3)

Length: 869 aa      View alignments
>bmy_16395T0
VTGISNLPSLCPSLAKCSLLILGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAESDFVCNNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCTPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCQPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHVNECLVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRALVTADIQWPNGITLDLIKGRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIIYHALVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPNGYNLEDNGRECQSTATTVTYSETKDTNTTEMSPTSGLAPGEINVTTAVSEVSVPPKGTSAAWAILPLLLLAMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA*