Part of scaffold_1333 (Scaffold)

For more information consult the page for scaffold_1333 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

FAM171A1 ENSTTRG00000004422 (Bottlenosed dolphin)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004165, Bottlenosed dolphin)

Protein Percentage 94.7%
cDNA percentage 95.58%
Ka/Ks Ratio 0.27923 (Ka = 0.0307, Ks = 0.11)

C13H10ORF38 ENSBTAG00000008787 (Cow)

Gene Details

protein FAM171A1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000032454, Cow)

Protein Percentage 90.74%
cDNA percentage 90.29%
Ka/Ks Ratio 0.15183 (Ka = 0.0501, Ks = 0.3298)

FAM171A1  (Minke Whale)

Gene Details

family with sequence similarity 171, member A1

External Links

Gene match (Identifier: BACU017220, Minke Whale)

Protein Percentage 95.75%
cDNA percentage 96.77%
Ka/Ks Ratio 0.41417 (Ka = 0.0263, Ks = 0.0634)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2049 bp    Location:159977..169301   Strand:+
>bmy_16408
ATGGACACAGGATATGACTCGAATCTTGAAGGATGGGTAGATTTTTGGAAGAGAGGAAAAGCATGTGAGGTTGGAACAACAGTTGAGGGCAAAGTCATGGACTCGGGAACGTGGCTGAAGAGTGGTCTCGGCCTCGTGCACCAGGAAGGAAGCCAGCTGACGTGGACATATATCGCCCCTCAGTTGGGGTACTGGGTGGCAGCCATGTCTCCTCCCAACCCAGGTCCCGTTGTCACACAGGACATCGCCACGTATCACACGGTGTTTCTTTTGGCCATCTTGGGAGGAATGGCTTTCATTCTTTTGGTTTTGCTGTGTCTCCTTTTATATTATTGCAGGCGGAAGTGCTTGAAACCCCGCCAGCACCATAGAAAACTGCAACTTCCTGCCACCCTGGAGAGTTCCAAAAGGGATCAGTCAACTTCCATGTCACACATCAACCTGCTGTTTTCTCGGCGGGAATCAGAATTCCCTGGCCCGCTCTCCGTCACCAGCCAGGGCCGCCCCCCGGACGCCCCGGGCTCAAAGGAGTTGATGAGCGGAGTCCATTTAGAGATGATGTCTTCCAGCGGGGAGGTGGACATGCACACGCCCATGCTGAAGCTCTCCTACAGCACCTCGCAGGAGTTCAGCTCTCGGGAGGAACTCCTGTCGCACAAGGAGGAGGATAAAAGCCAAATCTCCTTTGACAACCTGACACCGAGTGGGACGTTGGGAAAAGACTACCGTAAGTCGGTGGAGATTTTCCCCTTAAAGGCCAGGAAATCTGTGGAAAGGGAAGGCTATGAGTCCCCCGGCAACAGTGACTACAGGAGGAATTACAATGCCATGCTCTCGCAGCCTTTATTTGAAAAGCAAGACAGAGACGGTCAGGCCTCCGTGACCCACATTTCCACAGGAAGTAAGCTCACCATTCAGGAACACATGTACCCCGCGCCTTCATCTCCGGAGAAAGACCAGCTGATGGAGCGCAGACCTACTGAATGTATGATGTCGCGATCGGTAGACCACCTGGAGAGACCTACCTCTTTCCCGCGGCCCGGCCAGCTGATCTGCTGTAGTTCCGTGGACCAGGTCAATGACAGCGTTTACAGGAAAGTATTACCTGCCTTGGTCATCCCGGCTCATTACATGAAACTCCCAGGGGACCATTCGTATGTGGGCCAGCCCCTGGTCGTCCCAGCCGACCAGCAGCTCGAGATCGAAAGACTGCAGGCCGAGCTCTCCAGCCCTCACGCGGGGATCTTCCCACACGCCTCCTCACAGATCCAGGCCCAGCCCTTATCTTGCCAGGCCATCTCGCAGCAGCACCTGCAGGACGCGGGCACCCGGGAGTGGACCCCGCAGAATGCGTCCATGTCCGAGTCCCTCTCCATCCCGGCATCCCTGAACGACGCGGCCTTGGCTCAGATGAACAGCGAGGTCCAGCTCCTGACCGAAAAGGCGCTGTTGGAACTTGGGGGTGGGAAGCCCCTTCCCCACCCCCGGGCCTGGTTCGTCTCCCTGGACGGCCGGTCCAATGCACACGTCAGACATTCCTACATTGATCTCCAAAGAGCTGGGAGGAACGGAAGCAATGATGCCAGTTTGGATTCTGGCGTGGATATGAATGAACCCAAATCTGCCCGGAAGGGAAGAGGAGACCCCTTGCCTCTGCCGCAGAACCACCCACCGGTCCCGGAGCATGCGCAGAAAGAGCCGCGGGCCGCGGACAGCTCGGCCTACACGCAGCTCGTGTACCTGGACGACACGGACCAGAGCGGCAGCGAGGGCGGCACCGCGGTCGGGACGCCCGAGGACAGCGCCCTGCGGTGCCTGCTGGACGGCTCCAGCCGGAGAAGCGGCGGCCAGCTGCCCAGCCTGCAGGAGGAGACGACGAAACGAACCTCGGACGTCCCCCCGGCGCCATCGGCCAGTCCCGACAAGAGGCGATCGGCTCAGGAGGACGAGGACGACGACGACGACGACGACGACGACCAGGGCGAAGGCAAGAAGAGCCCGTGGCAGAAGCGGGAGGAGCGACCCCTGATGGCGTTCAACATCAAATGA

Related Sequences

bmy_16408T0 Protein

Length: 683 aa      View alignments
>bmy_16408T0
MDTGYDSNLEGWVDFWKRGKACEVGTTVEGKVMDSGTWLKSGLGLVHQEGSQLTWTYIAPQLGYWVAAMSPPNPGPVVTQDIATYHTVFLLAILGGMAFILLVLLCLLLYYCRRKCLKPRQHHRKLQLPATLESSKRDQSTSMSHINLLFSRRESEFPGPLSVTSQGRPPDAPGSKELMSGVHLEMMSSSGEVDMHTPMLKLSYSTSQEFSSREELLSHKEEDKSQISFDNLTPSGTLGKDYRKSVEIFPLKARKSVEREGYESPGNSDYRRNYNAMLSQPLFEKQDRDGQASVTHISTGSKLTIQEHMYPAPSSPEKDQLMERRPTECMMSRSVDHLERPTSFPRPGQLICCSSVDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVGQPLVVPADQQLEIERLQAELSSPHAGIFPHASSQIQAQPLSCQAISQQHLQDAGTREWTPQNASMSESLSIPASLNDAALAQMNSEVQLLTEKALLELGGGKPLPHPRAWFVSLDGRSNAHVRHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDPLPLPQNHPPVPEHAQKEPRAADSSAYTQLVYLDDTDQSGSEGGTAVGTPEDSALRCLLDGSSRRSGGQLPSLQEETTKRTSDVPPAPSASPDKRRSAQEDEDDDDDDDDDQGEGKKSPWQKREERPLMAFNIK*