Part of scaffold_1333 (Scaffold)

For more information consult the page for scaffold_1333 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDNF ENSTTRG00000004390 (Bottlenosed dolphin)

Gene Details

cerebral dopamine neurotrophic factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004131, Bottlenosed dolphin)

Protein Percentage 91.19%
cDNA percentage 90.78%
Ka/Ks Ratio 0.31499 (Ka = 0.0684, Ks = 0.2172)

CDNF ENSBTAG00000016450 (Cow)

Gene Details

cerebral dopamine neurotrophic factor precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021871, Cow)

Protein Percentage 86.75%
cDNA percentage 86.35%
Ka/Ks Ratio 0.22772 (Ka = 0.0891, Ks = 0.3914)

CDNF  (Minke Whale)

Gene Details

cerebral dopamine neurotrophic factor

External Links

Gene match (Identifier: BACU017226, Minke Whale)

Protein Percentage 92.17%
cDNA percentage 91.37%
Ka/Ks Ratio 0.27536 (Ka = 0.0611, Ks = 0.222)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 501 bp    Location:483245..489214   Strand:+
>bmy_16417
TGTGGTAGTGGTGATATTGTACACAAATACATAATTTATTTGTTCCTTCTAGTGTGTCAAGAATTCTTGAACCGATTCTACAACTCCTTGATAGCCAGAGGAGTCAACTTTTCTCTGGACACCATAGAAAAAGAATTGATCAGCTTTTGCTTGGATGTCAAAGGAAAAGAAAACCGCCTGTGCTACTATCTAGGAGCAACAAAAGATGCGGCCACAAAGATCCTAAGTGAGGTCACTCGCCCAATGAGTGTGCACATGCCTGCAGTGAAGATTTGCGAGAAGCTGAAAAGGATGGACAGTCAGATCTGTGAGCTGAAATACGAAAAAAAATTGGATTTGGCATCAGTGGACCTGTCCAAGATGAGAGTAGCAGAGCTGAAACAGATACTGTACAGCTGGGGAGAAGAATGCAGGGCCTGTGCGGAAAAAACCGACTATGTGAATCTCATCAAAGAACTGGCACCCAAGTACACAGCGACGTACCCCAAAACAGAACTCTGA

Related Sequences

bmy_16417T0 Protein

Length: 167 aa      View alignments
>bmy_16417T0
CGSGDIVHKYIIYLFLLVCQEFLNRFYNSLIARGVNFSLDTIEKELISFCLDVKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPAVKICEKLKRMDSQICELKYEKKLDLASVDLSKMRVAELKQILYSWGEECRACAEKTDYVNLIKELAPKYTATYPKTEL*