Sequence details bmy_16425 (Coding sequence)

Part of scaffold_1293 (Scaffold)

For more information consult the page for scaffold_1293 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL9A3 ENSTTRG00000001775 (Bottlenosed dolphin)

Gene Details

collagen, type IX, alpha 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001680, Bottlenosed dolphin)

Protein Percentage 86.0%
cDNA percentage 86.42%
Ka/Ks Ratio 0.4546 (Ka = 0.0493, Ks = 0.1084)

BT.10803 ENSBTAG00000015581 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020699, Cow)

Protein Percentage 91.41%
cDNA percentage 88.97%
Ka/Ks Ratio 0.22419 (Ka = 0.0588, Ks = 0.2625)

COL9A3  (Minke Whale)

Gene Details

collagen, type IX, alpha 3

External Links

Gene match (Identifier: BACU011250, Minke Whale)

Protein Percentage 86.99%
cDNA percentage 89.03%
Ka/Ks Ratio 0.57138 (Ka = 0.0996, Ks = 0.1743)

Additional orthologs identified in other species via the OPTIC pipeline.

COL9A3 (Human)   Col9a3 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1779 bp    Location:200827..179390   Strand:-
Raw sequence 
>bmy_16425
GGGCGGGAACTGGCGTCCAGCCCGCCACCAGCCCCGCCCGCCGAGCCGAGCTCAGGCCACCGCCACCCCGCCGGCTGCACTCAGAGCGCGTGTGCGGCCATGGCCGGAGCCCCCGCCCTGGCCCTGCTCCTGCTTGGGCGGCTGCTGGCCGCCACCGTGACCGTGACCGAGGCGCAGAAAGTGGGACCTCGAGGCCCCCCCGGCCCCCGAGGGCCACCTGGGAAGCCAGGCAAGGACGGCATTGATGGAGAAGTTGGTCCTCCAGGTCTGCCCGGGCCCTTGGGACCGAAAGGGGCCCCGGGGAAGCCAGGGAAACCAGGAGAGGCCGGGCTGCCGGGACTGCCTGGTGTGGATGGCCTGACCGGGCAGGATGGACCCCCTGGACCCAAGGGCGCCCCCGGAGAACGGGGAGAGGCAGGGGTGAGCGGCGTCCCAGGTGGAATCGGCCTCCGGGGCCCCCTGGGTCGCCCAGGGGTCCTTCCCGAAGGCGCTACTGACCTTCAGTGCCCGGCCATCTGCCCGCCAGGCCCCCCGGGGCCCCCAGGAATGCCAGGGTTCAAGGGACCCACCGGCTACAAAGGGGAGCAAGGAGAAGTCGGCAAGGATGGCGAGAAGGGTGACCCCGGCCCCCCTGGGCCCCCTGGCATCCCAGGCACCGTGGGGCTGCAGGGTCCACGGGGCCTACGAGGATTTCCAGGGCCACTCGGACCCCCCGGGGACCGGGGTCCCATCGGGTTCCGAGGGCCCCCCGGGATCCCAGGAGCCCCTGGGAAAGTGGGTGACAGAGGCGAGAGGGGCCCAGAGGGGTTGCGCGGCCCCAAGGGCGACCTCGGAGAAGCTGGTCGCAACGGTGCCCCAGGAGAGAAGGGTCCCAATGGGCTGCCGGGGGCTCTGGGCCCGCAAGGCCCCCCCGGAGCCCCTGGTGTCCGCGGTTTCCAGGGCCGGAAGGGCAGCATGGGAGACCCCGGCCTGCCCGGCCCCCAAGGCCTCCGAGGCGGCGTGGGCGAGCGGGGCCCGGGAGGAGCTGCAGGCCCAAAGGGCGACCAGGGCATCGCGGGCGCCGATGGCCTTCCTGGGGATAAAGGAGAACTGGGTCCCAGTGGCCCTGTCGGACCCAAAGGAGAGTCCGGCAGTCGAGGGGAGCTGGGTCCCAAGGGCATCCAGGGCCCCAACGGCACCAGCGGCGTAGACGGCGTCCCAGGCCACCCTGGCCCTATGGGCCTCCAGGGCGTGCGTGGCGTGCCTGGCGTCACTGGGAAACCCGGAGTCCCGGGGCAAGAAGCCAGCGAGCAGCGCGTCAGGGAGCTGTGTGGGGGGATGGTCAGCGAGCAAATCGCACAGCTAGCCGCGCACTTGAGGAAGCCCTTAGCACCGGGGTCCATCGGTCGGCCGGGTCCCGCCGGCCCCCCCGGCCCCCCGGGGCCCCCAGGCTCCATCGGTCACCCCGGGGCTCGAGGGCCCCCTGGATACCGCGGTCCCACCGGAGAGCTGGGAGACCCCGGACCCAGAGGAAACCAGGGGGACAGAGGAGACAAAGGCTCAGCTGGCGAGGGCCTGGACGGGCCTGACGGAGACCAAGGGCTCCAAGGACCACAAGGCGTGCCTGGTGTTAGCAAAGACGGCCGCGACGGGGCCCACGGAGAGCCTGGGCTCCCTGGCGATCCTGGCCTTCCCGGTGCTGTTGGCGCTCAGGGGACCCCCGGCATTTGCGACACCTCCGCCTGCCAAGGAGCCGTGATGGGAGGGGGCGGGGACAAATCAGGTCCCAGGAGCTCCTAA

Related Sequences

bmy_16425T0 Protein

Length: 593 aa      View alignments
>bmy_16425T0
GRELASSPPPAPPAEPSSGHRHPAGCTQSACAAMAGAPALALLLLGRLLAATVTVTEAQKVGPRGPPGPRGPPGKPGKDGIDGEVGPPGLPGPLGPKGAPGKPGKPGEAGLPGLPGVDGLTGQDGPPGPKGAPGERGEAGVSGVPGGIGLRGPLGRPGVLPEGATDLQCPAICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPPGIPGTVGLQGPRGLRGFPGPLGPPGDRGPIGFRGPPGIPGAPGKVGDRGERGPEGLRGPKGDLGEAGRNGAPGEKGPNGLPGALGPQGPPGAPGVRGFQGRKGSMGDPGLPGPQGLRGGVGERGPGGAAGPKGDQGIAGADGLPGDKGELGPSGPVGPKGESGSRGELGPKGIQGPNGTSGVDGVPGHPGPMGLQGVRGVPGVTGKPGVPGQEASEQRVRELCGGMVSEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGSAGEGLDGPDGDQGLQGPQGVPGVSKDGRDGAHGEPGLPGDPGLPGAVGAQGTPGICDTSACQGAVMGGGGDKSGPRSS*