Part of scaffold_1401 (Scaffold)

For more information consult the page for scaffold_1401 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF19 ENSTTRG00000012476 (Bottlenosed dolphin)

Gene Details

pre-mRNA processing factor 19

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011838, Bottlenosed dolphin)

Protein Percentage 94.24%
cDNA percentage 93.98%
Ka/Ks Ratio 0.32185 (Ka = 0.0442, Ks = 0.1375)

PRPF19 ENSBTAG00000014366 (Cow)

Gene Details

Pre-mRNA-processing factor 19

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000019100, Cow)

Protein Percentage 94.52%
cDNA percentage 90.25%
Ka/Ks Ratio 0.1188 (Ka = 0.0426, Ks = 0.3582)

PRPF19  (Minke Whale)

Gene Details

pre-mRNA processing factor 19

External Links

Gene match (Identifier: BACU005412, Minke Whale)

Protein Percentage 93.21%
cDNA percentage 93.73%
Ka/Ks Ratio 0.472 (Ka = 0.054, Ks = 0.1143)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1152 bp    Location:318069..307969   Strand:-
>bmy_16542
ATGTCCCTCATCTGCTCTATCTCCAATGAAGTGCCAGAGCACCCGTGTGTGTCCCCCGTCTCTAATCACGTCTACGAGCGGCGGCTCATTGAGAAGTATATTGCAGAGAACGGCACAGATCCCATCAACAACCAGCCTCTGTCCGAGGAGCAACTCATTGATATCAAAGTTGCTCACCCAATCCGGCCCAAGCCTCCCTCAGCCACCAGCATCCCGGCCATTCTGAAAGCCTTGCAGGACGAATGGGACGCAGTCATGCTCCACAGCTTCACCCTGCGCCAGCAGCTGCAGACCACCCGCCAAGAGCTGTCCCACGCTCTGTACCAGCACGATGCCGCCTGCCGTGTCATCGCCCGTCTCACCAAGGAGGTCACTGCTGCCCGAGAAGCTCTGGCTACCCTGAAACCGCAGGCTGGTCTCATCGTGCCCCAGGCTGTGCCGAGCTCCCAGCCGAGTGTTGTGGGTGCAGGCGAGCCGATGGATTTGGGCGAGCTGGTGGGAATGACCCCCGAGATTATTCAGAAGCTTCAAGACAAGGCCACTGTGCTAACCACAGAGCGGAAGAAGAGAGGGAAGACTGTGCCTGAGGAGCTGGTGAAGCCGGAAGAGCTCAGCAAATACCGGCAGGTGGCATCCCACGTGGGGTTGCACAGTGCTAGCATTCCCGGGATCCTTGCCCTGGACCTCTGCCCCTCCGACACCAACAAGATCCTCACTGGTGGGGCAGATAAAAATGTCGTCGTCTTCGACAAGAGTTCTGAGCAAATCCTGGCCACCCTCAAAGGCCATACCAAGAAAGTCACCAGCGTGGTCTTCCACCCTTCCCAGGAGCTGGTGTTTTCCGCCTCCCCAGATGCCACTATCAGGATTTGGTCTGTTCCGAACGCCTCTTGTGTACAGGTTGTTCGGGCCCATGAGAGTGCTGTGACAGGCCTCAGCCTCCACGCCACTGGTGACTATCTCCTGAGCTCCTCTGATGACCAGTACTGGGCCTTCTCTGACATCCAGACAGGACGTGTGCTCACCAAGGTGACCGATGAAACCTCTGGCTGCTGTAAGTTGCCTCGGAAGCGCTGGGCTCTTCATTTGCTACGTTTTGTGTATTTTAGTGTTTTATTTAGTCATTTGCTCATTTGTTCTAAAAACACTTAA

Related Sequences

bmy_16542T0 Protein

Length: 384 aa      View alignments
>bmy_16542T0
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCCKLPRKRWALHLLRFVYFSVLFSHLLICSKNT*