Sequence details bmy_16631 (Coding sequence)

Part of scaffold_1361 (Scaffold)

For more information consult the page for scaffold_1361 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HDAC6 ENSTTRG00000004685 (Bottlenosed dolphin)

Gene Details

histone deacetylase 6

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004443, Bottlenosed dolphin)

Protein Percentage 94.78%
cDNA percentage 95.38%
Ka/Ks Ratio 0.34006 (Ka = 0.014, Ks = 0.0413)

BT.76413 ENSBTAG00000013244 (Cow)

Gene Details

histone deacetylase 6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017618, Cow)

Protein Percentage 85.69%
cDNA percentage 88.03%
Ka/Ks Ratio 0.27785 (Ka = 0.0818, Ks = 0.2945)

HDAC6  (Minke Whale)

Gene Details

histone deacetylase 6

External Links

Gene match (Identifier: BACU008482, Minke Whale)

Protein Percentage 90.53%
cDNA percentage 92.91%
Ka/Ks Ratio 0.63983 (Ka = 0.0667, Ks = 0.1043)

Additional orthologs identified in other species via the OPTIC pipeline.

HDAC6 (Human)   Hdac6 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3360 bp    Location:151931..170707   Strand:+
Raw sequence 
>bmy_16631
ATGACCTCCACCGGCCAGGATTCCACCACAACCAGACAGCGAAGGAGTAGGCACAATCCCCATTCCCCCCCCCACGACTCCAGCGTCACCTCGGTGAGGCCCCAGACCTCGAAGCGAGGTGTTAAAAAGGGTGCCGTACTCCGCTCCAGCCCCAATCTAGCGGAGGTAAAGAAGAAAGGCAGAATGAAGAAGCTTAGTCAAGCAGCCGAGCAAGACCTAGTCGTGGGGCTGCAAGGGCTGGATCTGAACCGGGAGGCCAGGACACCGTCTGGCACTGGSTTGGTGTTCGATGAGCAGCTAAATGAATTCCACTGCCTCTGGGATGACAGCTTCCCTGAAGGCCCTGAGCGGCTCCATGCCATCAAGGAGCAGCTGATCCAGGAGGGCCTCCTGGATCGCTGTGTGTCCTTTCAGGCCCGATTCGCCGAAAAGGAGGAGCTGATGTTGGTTCACAGTCTAGAATACATTGATCTGATGGAGACGACCCAGTACATGAATGAGGGGGAACTCCGTGTCCTAGCAGATACCTATGACTCAGTTTATCTGCATCCGAATTCATACACCTGTGCCTGCCTGGCCTCAGGCTCCGTCCTCAGGCTGGTGGATGCAGTCCTGGGGGCTGAGATCCGGAATGGCATGGCGATAATCAGGCCTCCTGGACACCACGCCCAGCACAGTCTTATGGACGGGTATTGCATGTTCAACCACGTGGCTGTGGCTGCCCGCTATGCTCAACAGAAGCATGACATTCAGAGGGTCCTTATCGTGGATTGGGATGTGCACCATGGTCAAGGAACACAGTTCACCTTTGACCAAGACCCCAGCGTCCTCTATTTCTCCATCCACCGCTACGAGCAGGGTCGGTTCTGGCCCCACCTTACAGCCTCCAACTGGTCCACCACAGGTTTTGGCCAAGGCCAGGGATACACCATCAATGTGCCTTGGAACCAGGTGGGGATGCGAGATGCCGACTACATCGCCGCTTTCCTGCACGTCCTGCTGCCAGTTTCCCTTGAGTTCCAGCCCCAGCTGGTCCTGGTAGCTGCTGGATTTGATGCCCTCCAAGGGGACCCCAAGGGTGGCTACAACCTCCGCTCCCTGGCTGAGGGCGTCAGCGCCTCTCTCCACACCCTTCTGGGAGACCCTTGCCCCGTGCTGGAGTTCCCTGGCGCCCCTTGCCCGAGTGCCCAGGCGTCGATCTCCTGTGCTCTGGAAGCCCTTGAGCCCTTCTGGGAGGTCTTTGTGAGATCAGCTGAGACCCTGGAGGAGGAGGACACTGTGGAGGGGGACAATGTGGAGGAGAAGGAGGAGGAGGGACCGTGGCAGCCCCCTGAGCTCCCAATCCTGACGTGGCCGGTGCTGCAGGCTCGCACAGGGCTGGTCTATGACCAACAGATGATGGATCACTACAACTTGTGGGACAACCACCACCCCGAGACGCCTCAGCGCATCCAGCGTATCATGCACCACCTGGAAGAGCTGGGTCTTGCCGGGCGCTGTCTCGCCCTGCCCGCACGTCCAGCCACGGACGCTGAGCTGCTCGCCTGCCACAGTGCTGAGCATGTGGATCGTCTGCGGGCCACGGAGAAGATGAAAATCCGGGAGCTGCACCGCGAGGGCGCCAACTATGACTCCATCTACATCTGCCCCAGCACCTTCACCTGTGCACAGCTGGCTGCTGGCGCCGCCTGCCGCCTGGTGGAGGCTGTGCTGGCGGGAGAGGTTTTGAATGGCATTGCTGTGGTGCGTCCCCCCGGCCACCATGCAGAGCGGGATGCCGCTTGCGGTTTCTGCTTTTTCAACTCTGTGGCTGTGGCTGCTCGCCATGCCCAGGCCGTCAGTGGGCGTGCGCTGCGGATCCTGATCGTGGACTGGGACGTCCATCATGGTAATGGAACTCAGCACATATTTGAGGAGGACCCCAGCGTGCTGTACATTTCTCTGCACCGCTATGATCATGGCACCTTCTTTCCTATGGGGGACGAGGGTGCCAGCAGCCAGATAGGTCAGGCTGCAGGCACGGGCTTCACCGTCAATGTGGCCTGGAATGGGCCCCGCTTGGGTGACGCCGACTACCTGGTTGCCTGGCATCGTCTGGTGCTTCCCATTGCCTATGAGTTTAACCCGGAACTGGTGCTGGTCTCAGCTGGCTTCGATGCTGCCCGGGGGGACCCACTGGGCAGCTGCCAGGTGTCGCCTGAGGGCTATGCCCACCTCACCCACCTGCTGATGGGCCTGGCCAATGGCCGCATTATCCTTATCCTAGAGGGTGGTTATAACCTGACATCCATCTCGGAGTCCATGGCCGCCTGTACCCACTCCCTCCTTGGGGACCCGCCACCCCTGCTGACCCTGCTGCGGCCCCCACTGTCAGGGGCCCTGGCCTCGATCACCGAGACCATCCAAGTCCATCGCAGATACTGGTGCAGCTTGCGGGTCACAAAGGTCAAAGATAAAGAGGGACCCTCCAGTTCTAAGTTGATCACCAAGAAGGCACCCCAGCCAGCCAATCCTGGGTCAACCAAGGGGATGACCATGCCAGAAGGGAACATTCTGGAGGCAGGCACGGGGAAGGCCACCTCAGCAACATCTGTGAAAGAGTCCACTCCAGGCCAGACTACGTCAGAGACAGCTGTGATGGAGTTCACTCAGGACCAGTCATCAGAGACAGCCATGGGAGGAGCTGCTGGGCTGAACCAGGCCACCTCAGAGGCAGCCACAGGGGATGCCACGCTGGACCAGACCACCTCGGAGGAGGCTGTGGGGGGAGCTGAGCTGATCCAAAGCCCTCCAGCCTCATGCGCTGACAGTCAGACTCCTCCAGCGTCACCTATGCAAGGAGCCACAACCCAGATATCCCCCAGTAAGCTGACTGGAAATCTCAGGACCTTGGAACTAGACAAGGCACAGGAACCCCCAGAAGAGGAGGAGCTACTAGGAGAGGCAGCTGGAGGTCAGGACATGAATGAGTCAGTACTGATGCAGGTCACTGGAGACCATGCTGACACTGACCAAGCCATGTTTTATGCTGTAACACCACTGCCCTGGTGTCCCCATTTGGTGGCAGTATGCCCCGTACCTGAAGCAGGCCTGGATGTGACCCAACCTTGTCAGGACTGTGGAGCACTCCAGGAGAACTGGGTGTGTCTGTCTTGCTACCAGGTCTGCTGCAGTCGTTACATCAACGCCCATATGCTCCAACACCATGAAGGCTCGGGACACCCGCTGGTACTCAGCTACGCCGACCTGTCTACCTGGTGTTACCACTGTCAAGCCTACGTTCACCACGAGGCTCTCCTAGCTGTGAAGAACATCGCCCACCAGAACAAGTTTGGGGAGAACATGCCCCACTCACACTAA

Related Sequences

bmy_16631T0 Protein

Length: 1120 aa      View alignments
>bmy_16631T0
MTSTGQDSTTTRQRRSRHNPHSPPHDSSVTSVRPQTSKRGVKKGAVLRSSPNLAEVKKKGRMKKLSQAAEQDLVVGLQGLDLNREARTPSGTGLVFDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYTCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHDIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLTASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVSLEFQPQLVLVAAGFDALQGDPKGGYNLRSLAEGVSASLHTLLGDPCPVLEFPGAPCPSAQASISCALEALEPFWEVFVRSAETLEEEDTVEGDNVEEKEEEGPWQPPELPILTWPVLQARTGLVYDQQMMDHYNLWDNHHPETPQRIQRIMHHLEELGLAGRCLALPARPATDAELLACHSAEHVDRLRATEKMKIRELHREGANYDSIYICPSTFTCAQLAAGAACRLVEAVLAGEVLNGIAVVRPPGHHAERDAACGFCFFNSVAVAARHAQAVSGRALRILIVDWDVHHGNGTQHIFEEDPSVLYISLHRYDHGTFFPMGDEGASSQIGQAAGTGFTVNVAWNGPRLGDADYLVAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGSCQVSPEGYAHLTHLLMGLANGRIILILEGGYNLTSISESMAACTHSLLGDPPPLLTLLRPPLSGALASITETIQVHRRYWCSLRVTKVKDKEGPSSSKLITKKAPQPANPGSTKGMTMPEGNILEAGTGKATSATSVKESTPGQTTSETAVMEFTQDQSSETAMGGAAGLNQATSEAATGDATLDQTTSEEAVGGAELIQSPPASCADSQTPPASPMQGATTQISPSKLTGNLRTLELDKAQEPPEEEELLGEAAGGQDMNESVLMQVTGDHADTDQAMFYAVTPLPWCPHLVAVCPVPEAGLDVTQPCQDCGALQENWVCLSCYQVCCSRYINAHMLQHHEGSGHPLVLSYADLSTWCYHCQAYVHHEALLAVKNIAHQNKFGENMPHSH*