Part of scaffold_1391 (Scaffold)

For more information consult the page for scaffold_1391 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRF1 ENSTTRG00000007613 (Bottlenosed dolphin)

Gene Details

perforin 1 (pore forming protein)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007201, Bottlenosed dolphin)

Protein Percentage 82.7%
cDNA percentage 85.53%
Ka/Ks Ratio 0.30919 (Ka = 0.0342, Ks = 0.1105)

BT.21975 ENSBTAG00000001008 (Cow)

Gene Details

perforin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001336, Cow)

Protein Percentage 84.84%
cDNA percentage 88.51%
Ka/Ks Ratio 0.19301 (Ka = 0.0786, Ks = 0.4074)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1668 bp    Location:240660..243292   Strand:+
>bmy_16723
ATGGCCTCCCGAGTGCTCCTCCCTGGCATCCTCCTCCTGCTTCTGCCCGCACCCGCCCCTGCCCCCTGCTACACGGCCGCACGTTCTGAGTGCCGGCGCAACCTCAAGTTCGTGCCTGGCTCCTGGCTGGCAGGGGAGGGCGTGGACGTGACCAGCCTCCGGCGCTCAGGCTCCTTCCCGGTGGACACACAGCACTTCCTTCGGCCCGACGGCACCTGTACCCTCTGCCGCAATGCCCTGCAGCAGGGTGCCCTCCAGCGCCTGCCCCTGGCGCTCACCGACTGGCGCGCCCAGGGCTCGGGCTGCAACCGCAAAGTGGTCAAGGATGAGGGTCGCTCCACCGAGGAGGTGGCTGGGGAGGCGGCCAACAGCATCCGTAACGACTGGCAGGTGGGGCTGGACGTGACTCCCAAGCCCAGCAGCAACGTGCGCGTGACCGTGGCGGGCTCCCACTCCAAGGCAGCCAACTTCGCGGCCCAGAAGACTCACCAGGACCAGTACCGCTTCAGCCTGGACTCAGTGGAGTGTCGCTTCTACAGTTTCCACCTGGTGCACACTCCCCCACTGCACCCTGAGTTCAAGAGGGCCCTCAAGACCCTGCCCCCCCACTTCAACATCTCCACCGAGCCTGACTACCGGAGGCTCATCTCCAGCTATGGCACCCACTTCATCCGGTCCATGGAGCTGGGAGGCCGCATCTCGGCCCTCACCGCCCTGCGCACCTGCGAGCTGGCCCTGGAAGGGCTCACGGCCCAGGAGGTTGAGGACTGCCTGGCCGTCGAGGCCGAGGTCAACATAAGAAGCCACGCCAGTGCCTCGTCGGCATTCAAGGAGTGTGAGGAGAAGAAGAAACAGCACAAGATGGGGACCTCCTTCCACCAGGCCTACCGGGAACGCTGTTCTGAGGTCGTTGGCGGCCACCACACGTCCATGCATGACCTGCTGTTCGGGAACCAGGCCGGGCCCGAGCAGTTCTCAGCCTGGGTGGCCTCGCTGCGGGACAGCCCCGGCCTGGTGGACTACACGCTAGAGCCACTCCACTTGCTCCTGGACAGCCGGGACCCGCGGCGGGAGGCGCTCAGGCAGGCTGTGAGCAAGTACGTGACGGACAGGGCACGCTGGAGGGACTGCAGCCGCCCGTGCCCCCCGGGGCAGCGCAAGAACCCTAAGGACCCGTGCCAGTGCATGTGCCACGGCTCGGCGGCCACCAACCAGGACTGCTGTCCCAGGAAGAGGGGCCTGGCCCACCTGGAGGTCATGAACTTCCTGGCGACGGGTCTGTGGGGAGACTGGACCACTGCCACGGACGCCTACCTGAAGGTCTTCTTCGGCGGCCGGGAGCTGAGGACCGACACAGTGTGGAACGATAACCACCCCAGGTGGATGACACAGCTGGACTTCGGGGATGTGGTCCTGACCACAGGGGGCCCCCTGAGGGTGCAGGTCTGGGATGCAGACTCTGGCTGGGACGATGACCTTCTCGGTACCTGTGACCAGACTCCAAAGTCTGGCTCACACGAGGTGAAGTGCCCCCTGAAGCACGGTCACCTGAGATTCTCCTACCATGCTAAGTGCTTACCTCACCTGGCGGGGGGGACATGCCTGGAGTACGCCCCCCAAGGGCTTCTGGGGGAGCCTCCAGGAAACCGGAGTGGGCCAGTGTGGTGA

Related Sequences

bmy_16723T0 Protein

Length: 556 aa      View alignments
>bmy_16723T0
MASRVLLPGILLLLLPAPAPAPCYTAARSECRRNLKFVPGSWLAGEGVDVTSLRRSGSFPVDTQHFLRPDGTCTLCRNALQQGALQRLPLALTDWRAQGSGCNRKVVKDEGRSTEEVAGEAANSIRNDWQVGLDVTPKPSSNVRVTVAGSHSKAANFAAQKTHQDQYRFSLDSVECRFYSFHLVHTPPLHPEFKRALKTLPPHFNISTEPDYRRLISSYGTHFIRSMELGGRISALTALRTCELALEGLTAQEVEDCLAVEAEVNIRSHASASSAFKECEEKKKQHKMGTSFHQAYRERCSEVVGGHHTSMHDLLFGNQAGPEQFSAWVASLRDSPGLVDYTLEPLHLLLDSRDPRREALRQAVSKYVTDRARWRDCSRPCPPGQRKNPKDPCQCMCHGSAATNQDCCPRKRGLAHLEVMNFLATGLWGDWTTATDAYLKVFFGGRELRTDTVWNDNHPRWMTQLDFGDVVLTTGGPLRVQVWDADSGWDDDLLGTCDQTPKSGSHEVKCPLKHGHLRFSYHAKCLPHLAGGTCLEYAPQGLLGEPPGNRSGPVW*