Sequence detailsbmy_16821 (Coding sequence)

Part of scaffold_1365 (SequenceType object (1))

For more information consult the page for scaffold_1365 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CNN1 (Minke Whale)

Gene Details

calponin 1, basic, smooth muscle

External Links

Gene match (Identifier: BACU002469, Minke Whale)

Protein Percentage 92.93%
cDNA percentage 93.49%
Ka/Ks Ratio 0.21884 (Ka = 0.0488, Ks = 0.2231)

Additional orthologs identified in other species via the OPTIC pipeline.

CNN1 (Cow)   CNN1 (Human)   Cnn1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 894 bp    Location:122922..116251   Strand:-
Raw sequence 
>bmy_16821
ATGTCCTCTGCTCACTTCAACCGAGGCCCCGCCTACGGGCTGTCAGCTGAGGTCAAGAACAAGCTGGCCCAGAAATACGACCACCAGCGGGAGCAGGAGCTTCGAGAGTGGATCGAGGGGGTGACAGGGCGCCGCATTGGCAACAACTTCATGGACGGCCTCAAAGACGGCATCATTCTTTGCGAGTTCATCAATAAGCTCCAGCCAGGCTCTGTGAAGAAGGTCAATGAGTCCACCCAGAACTGGCACCAGCTGGAGAATATCGGCAACTTCATCAAGGCCATCACCAAGTACGGGGTGAAGCCCCACGACATCTTTGAGGCCAACGACCTGTTCGAGAACACCAACTACACCCAAGTGCAGTCCACCCTCCTGGCCCTGGCCAGCATGGCCAAGACGAAAGGGAACAAGGTGAACGTGGGAGTGAAATACGCAGAGAAGCAGGAACGGAAATTTGAGCCAGAGAAGCTAAGAGAAGGGCGGAACATCATCGGGCTGCAGATGGGCACCAACAAGTTTGCCAGCCAGCAGGGCATGACAGCCTATGGCACCCGGCGCCACCTCTACGACCCCAAGCTGGGCACAGACCAGCCCCTGGACCAGGCCACCATCAGCCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCCGGCATGACTGCTCCCGGGACCAAGCGGCAGATCTTCGAGCCGGGGCTGGGCATGGAGCACTGCGACACGCTCAATGTCAGCCTGCAGATGGGCAGCAACAAGGGGGCCTCGCAGCGGGGCATGACGGTGTATGGGCTGCCCCGCCAGGTCTACGACCCCAAGTACTGCCTGACGCCCGAGTACCCGGAGCTGGGCGAGCCTGCCCACAACCACCACACGCACAACTACTACAACTCCGCCTAG

Related Sequences

bmy_16821T0 SequenceType object (3)

Length: 298 aa      
>bmy_16821T0
MSSAHFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNYTQVQSTLLALASMAKTKGNKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYPELGEPAHNHHTHNYYNSA*