Part of scaffold_1365 (Scaffold)

For more information consult the page for scaffold_1365 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LDLR ENSTTRG00000009518 (Bottlenosed dolphin)

Gene Details

low density lipoprotein receptor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009019, Bottlenosed dolphin)

Protein Percentage 88.56%
cDNA percentage 91.58%
Ka/Ks Ratio 0.24577 (Ka = 0.0606, Ks = 0.2466)

LDLR ENSBTAG00000012314 (Cow)

Gene Details

low-density lipoprotein receptor precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016342, Cow)

Protein Percentage 84.5%
cDNA percentage 86.27%
Ka/Ks Ratio 0.12409 (Ka = 0.0845, Ks = 0.6813)

LDLR  (Minke Whale)

Gene Details

low density lipoprotein receptor

External Links

Gene match (Identifier: BACU002482, Minke Whale)

Protein Percentage 88.16%
cDNA percentage 90.47%
Ka/Ks Ratio 0.27614 (Ka = 0.0544, Ks = 0.1969)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2268 bp    Location:433200..407671   Strand:-
>bmy_16838
ATGGTCGTTTCTAATCCTGACCCTGATCCTTCCTTCTCCTTTCCTTCTCTCTCAGTGGAAGACAAATGTGGGAGAAATGAGTTCCAGTGCCGAGATGGGAAATGCATCTCCTACAAGTGGGTTTGCGACGGGAGCGCTGAGTGCCAGGACGGCTCCGATGAGTCCCAGGAGATGTGCATGTCTGTCACCTGCAAGACGGGGGACTTCAGCTGTGGGGGCCATGTCAACCGCTGCATTCCTGAGTCCTGGAGATGCGACGGCCAGCTGGACTGCGAGAACGGCTCAGACGAGGAAAGCTGTCCCCCCAAGACGTGCTCCCAGGACGAGTTCCGCTGCAATGACGGCAAGTGCATCGCCCCGAAGTTCGTCTGCGACTCGGACCTGGACTGCTTAGACGGCTCAGACGAGGTGTCCTGCCCCGTGCCCACCTGCGGCCCTGCCAGCTTCCAGTGCAACAGCACCACTTGCATCCCCGAGCTCTGGGCCTGCGACGGCGACCCCGACTGCGAAGACGGCTCGGACGAGTGGCCGCAGCGCTGTGGGGACCCCCAGCCGTCGGTCCCCGCATGGGACAACAACCCCTGCTCAGCTCTCGAGTTCCACTGCCGCAGCGGCGAATGCATCCACTCCAGCTGGCGCTGCGACCGCGACCCCGACTGCAAGGACAAGTCTGACGAGGAGAACTGTGCCGTGGCCACCTGCCGGCCTGACGAGTTCCAGTGCTCGGATGGGACCTGCATCCACGGCAGCCGGCAGTGCGACAGGGAGTATGATTGTAAGGACCTGAGCGACGAGCTGGGCTGCATCAATGGGACCAACGAGTGTCTGGACAACAAGGGCGGCTGCTCCCACATCTGCAATGACCTCAAGATCGGCTACGAGTGCCTGTGTCCTGAGGGCTTCCAGCTGGTGGACAAGCACAGATGTGAAGATATTGACGAGTGTCAGGACCCCGACGCCTGCAGCCAGCTCTGCGTGAACCTCGAGGGCAGCTACAAGTGCCAGTGTGAGGAGGGCTTCCAGCTGGAGCCCCTCACCAAGGCCTGCAAGGCCGTGGGCACCATCGCCTACCTCTTCTTCACCAACCGCCACGAAGTGAGGAAGATGACTCTGGACCGCAGCGAGTACGCCAGCCTCATCCCCAACCTGAAGAACGTGGTCGCCCTGGACACGGAGGTGGCCAGCAACAGAATCTACTGGTCTGACCTGTCCCAGAAGAAGATCTACAGCGCCCAGATCAACAGAGCCCCCAGCTTCTCTTCCTACGACACTGTCATCAGCGAGGATCTCCAGGCCCCCGACGGGCTGGCAGTGGATTGGATCCACAGCAACATATACTGGACTGACTCCATCCTGGGCACCGTCTCAGTGGCCGACACCAAGGGTGTGAAGAGGAAGACGCTCTTCCAAGAGGAAGGCTCCAAGCCACGGGCCATCGTGGTGGATCCCGTCCACGGCTTCATGTACTGGACGGACTGGGGAACCCCCGCCAAGATCAAGAAGGGGGGCCTGAATGGCGTGGACATTTACTCGCTGGTGACGGAGGACATCCAGTGGCCCAATGGCATCACCCTGGGTATGTTGGGGGCACAGTGGTCCTGGGGGGTCAGGCACAGTCTGGAAGAGAAGAAATGGCCACGGGCCTCCCTGAGATTTTATAACCTGAAACTCAGCTCCCATTCTCCCACATACCTGCATGCGGATAAAGTATTTTGGACGGATATTGTCAATGAAGCCATTTTCAGTGCCAACCGCCTCACGGGCTCGGACATTAATTTGATGGCAGAGAACCTGCTGTCTCCAGAGGACATCGTCCTTTTCCACAACCTCACGCAGCCGAGAGGGGTGAACTGGTGTGAGAGGACTGCCCTCCGCAACGGTGGCTGCCAGTACCTGTGTCTGCCAGCCCCGCAGATCAACCCCCACTCACCCAGGTTCACCTGTGCCTGCCCCGACGGCACGCTGCTGGCCAAGGACATGAGAAGCTGCCTTGCAGTCCTGGCTGATGTTGCCGGCCGAGCGGACGCGGAGAGGCCCCAGGGCGTGGGTGCTCTGTACATCGTCCTCCCAATCGCGCTGCTCATCCTCCTGTGCTTCGGGACCTTCCTCCTCTGGAAGAACTGGCGGCTTAAGAGCATCAACAGCATCAACTTTGACAACCCTGTGTACCAGAAGACCACGGAGGACGAGGTCCACATCTGCCGCAGCCAGGATGGCTACACCTACCCCGCGAGACAGATGGTCAGCCTAGAGGATGATGTGGCGTGA

Related Sequences

bmy_16838T0 Protein

Length: 756 aa      View alignments
>bmy_16838T0
MVVSNPDPDPSFSFPSLSVEDKCGRNEFQCRDGKCISYKWVCDGSAECQDGSDESQEMCMSVTCKTGDFSCGGHVNRCIPESWRCDGQLDCENGSDEESCPPKTCSQDEFRCNDGKCIAPKFVCDSDLDCLDGSDEVSCPVPTCGPASFQCNSTTCIPELWACDGDPDCEDGSDEWPQRCGDPQPSVPAWDNNPCSALEFHCRSGECIHSSWRCDRDPDCKDKSDEENCAVATCRPDEFQCSDGTCIHGSRQCDREYDCKDLSDELGCINGTNECLDNKGGCSHICNDLKIGYECLCPEGFQLVDKHRCEDIDECQDPDACSQLCVNLEGSYKCQCEEGFQLEPLTKACKAVGTIAYLFFTNRHEVRKMTLDRSEYASLIPNLKNVVALDTEVASNRIYWSDLSQKKIYSAQINRAPSFSSYDTVISEDLQAPDGLAVDWIHSNIYWTDSILGTVSVADTKGVKRKTLFQEEGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEDIQWPNGITLGMLGAQWSWGVRHSLEEKKWPRASLRFYNLKLSSHSPTYLHADKVFWTDIVNEAIFSANRLTGSDINLMAENLLSPEDIVLFHNLTQPRGVNWCERTALRNGGCQYLCLPAPQINPHSPRFTCACPDGTLLAKDMRSCLAVLADVAGRADAERPQGVGALYIVLPIALLILLCFGTFLLWKNWRLKSINSINFDNPVYQKTTEDEVHICRSQDGYTYPARQMVSLEDDVA*