Sequence details bmy_16859 (Coding sequence)

Part of scaffold_1388 (Scaffold)

For more information consult the page for scaffold_1388 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM1 ENSTTRG00000004482 (Bottlenosed dolphin)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004222, Bottlenosed dolphin)

Protein Percentage 86.92%
cDNA percentage 87.18%
Ka/Ks Ratio 0.34618 (Ka = 0.0996, Ks = 0.2876)

LSM1 ENSBTAG00000001612 (Cow)

Gene Details

U6 snRNA-associated Sm-like protein LSm1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002113, Cow)

Protein Percentage 86.15%
cDNA percentage 87.18%
Ka/Ks Ratio 0.36805 (Ka = 0.1031, Ks = 0.28)

Additional orthologs identified in other species via the OPTIC pipeline.

LSM1 (Human)  

Genome Location

Sequence Coding sequence

Length: 393 bp    Location:487614..498235   Strand:+
Raw sequence 
>bmy_16859
ATGAACTATATGCCCGGCACCGCCAGCCTCATCGAGGACATCGACACTGCTCATTTGTACATTGGCTTGGGTGCGACTACTCTTCAAAGCAGTTCCTGCCCTGAAGCTAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGCAAAAAATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAAATAGACTTAGAAAAGGAGAGTGACACACCCCTCCAGCAAGTGTCTATTGAGGAAATCCTAGAAGAGCAGAGGGCGGAGCAGCAGACCAAGCTGGAGGCCGAGAAGCTGAAAGTCCAGGCCCTGCAGGACCGAGGCCTGTCCATCCCTCGGGCAGATACTCTCGATGAGTACTAA

Related Sequences

bmy_16859T0 Protein

Length: 131 aa      View alignments
>bmy_16859T0
MNYMPGTASLIEDIDTAHLYIGLGATTLQSSSCPEANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRAEQQTKLEAEKLKVQALQDRGLSIPRADTLDEY*