Sequence detailsbmy_16859 (Coding sequence)

Part of scaffold_1388 (SequenceType object (1))

For more information consult the page for scaffold_1388 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM1ENSTTRG00000004482 (Bottlenosed dolphin)

Gene Details

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004222, Bottlenosed dolphin)

Protein Percentage 86.92%
cDNA percentage 87.18%
Ka/Ks Ratio 0.34618 (Ka = 0.0996, Ks = 0.2876)

LSM1ENSBTAG00000001612 (Cow)

Gene Details

U6 snRNA-associated Sm-like protein LSm1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000002113, Cow)

Protein Percentage 86.15%
cDNA percentage 87.18%
Ka/Ks Ratio 0.36805 (Ka = 0.1031, Ks = 0.28)

Additional orthologs identified in other species via the OPTIC pipeline.

LSM1 (Human)  

Genome Location

Sequence SequenceType object (2)

Length: 393 bp    Location:487614..498235   Strand:+
Raw sequence 
>bmy_16859
ATGAACTATATGCCCGGCACCGCCAGCCTCATCGAGGACATCGACACTGCTCATTTGTACATTGGCTTGGGTGCGACTACTCTTCAAAGCAGTTCCTGCCCTGAAGCTAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGCAAAAAATACGGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAAATAGACTTAGAAAAGGAGAGTGACACACCCCTCCAGCAAGTGTCTATTGAGGAAATCCTAGAAGAGCAGAGGGCGGAGCAGCAGACCAAGCTGGAGGCCGAGAAGCTGAAAGTCCAGGCCCTGCAGGACCGAGGCCTGTCCATCCCTCGGGCAGATACTCTCGATGAGTACTAA

Related Sequences

bmy_16859T0 SequenceType object (3)

Length: 131 aa      View alignments
>bmy_16859T0
MNYMPGTASLIEDIDTAHLYIGLGATTLQSSSCPEANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRAEQQTKLEAEKLKVQALQDRGLSIPRADTLDEY*