Part of scaffold_1404 (Scaffold)

For more information consult the page for scaffold_1404 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GZMB ENSTTRG00000016965 (Bottlenosed dolphin)

Gene Details

granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016081, Bottlenosed dolphin)

Protein Percentage 85.28%
cDNA percentage 88.81%
Ka/Ks Ratio 0.49095 (Ka = 0.0983, Ks = 0.2003)

BT.19365 ENSBTAG00000010057 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013262, Cow)

Protein Percentage 69.32%
cDNA percentage 78.79%
Ka/Ks Ratio 0.54185 (Ka = 0.2216, Ks = 0.4089)

GZMB  (Minke Whale)

Gene Details

granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)

External Links

Gene match (Identifier: BACU008683, Minke Whale)

Protein Percentage 91.13%
cDNA percentage 94.49%
Ka/Ks Ratio 0.47752 (Ka = 0.0462, Ks = 0.0968)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 798 bp    Location:68267..65138   Strand:-
>bmy_16875
ATGCAGCCACTCCTGCTCCTGCTCCTGCTCCTGTTGGYCTTTTTACTGCCCCCCAGGGCAAAGGCAGGTGCAGTCAGTGGTTGCACACAAGCAGAACAGTCTTTTCCTTCAGGGGAGATCATCGGGGGCCATGAGGCCAAGCGCCACTCCCGCCCCTACATGGCGTTTCTTCAGATCTGGGACCAGGATGACCGAAAAAGGTGCGGTGGGTTCCTGATTCGAGAGGACTTTGTGCTGACAGCCGCTCACTGCTGGGGAAGCTCAGTCAACGTCACCCTGGGGGCCCACAACATCAAGGTTCGGGAGAGGACCCAGCAGGTCATCCCGGTGAGAAAAGCCATCCCCCACCCAGACTATAATAAAAAGAACTACTCCAATGACATCATGTTACTAAAGCTGGAGAGAAAGGCCAAGCAGACTGCAGCCGTGAGACCCCTCAGCCTGCCCAGGGGCAAGGCCCGGGTGAAGCCAGGACAGGTGTGCAGTGTAGCCGGCTGGGGGCAGGTCGCTATGGGCACGTACTCAGACACACTGCAGGAGGTAAAGCTGACCATACAGAAGGATCAAGAGTGTGAATCCCACTTACACAATTATTACAACAACACCATTCAGCTGTGTGTGGGGGACCCAAAGGAAAACAAAGCTTCCTTTAAGGGGGACTCCGGGGGCCCTCTGGTGTGTAACAATGTGGCCCAGGGCATTGTCTCCTATGGACAAAAAAATGGGTCACCTCCACGGGCCTGCACCAAAGTCTCAAGTTTCCTGCCCTGGATAAAGAAAACCATGAAAACCCTCTGA

Related Sequences

bmy_16875T0 Protein

Length: 266 aa      View alignments
>bmy_16875T0
MQPLLLLLLLLLXFLLPPRAKAGAVSGCTQAEQSFPSGEIIGGHEAKRHSRPYMAFLQIWDQDDRKRCGGFLIREDFVLTAAHCWGSSVNVTLGAHNIKVRERTQQVIPVRKAIPHPDYNKKNYSNDIMLLKLERKAKQTAAVRPLSLPRGKARVKPGQVCSVAGWGQVAMGTYSDTLQEVKLTIQKDQECESHLHNYYNNTIQLCVGDPKENKASFKGDSGGPLVCNNVAQGIVSYGQKNGSPPRACTKVSSFLPWIKKTMKTL*