Sequence detailsbmy_16880 (Coding sequence)

Part of scaffold_1392 (SequenceType object (1))

For more information consult the page for scaffold_1392 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRDM16ENSTTRG00000003430 (Bottlenosed dolphin)

Gene Details

PR domain containing 16

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003218, Bottlenosed dolphin)

Protein Percentage 93.36%
cDNA percentage 95.61%
Ka/Ks Ratio 0.20772 (Ka = 0.0309, Ks = 0.1486)

PRDM16ENSBTAG00000018965 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000025245, Cow)

Protein Percentage 91.82%
cDNA percentage 92.8%
Ka/Ks Ratio 0.09298 (Ka = 0.0348, Ks = 0.374)

Additional orthologs identified in other species via the OPTIC pipeline.

PRDM16 (Human)   Prdm16 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3213 bp    Location:460442..497440   Strand:+
Raw sequence 
>bmy_16880
ATTTATTATAAAGTCATTAAGGACATTGAGCCAGGAGAAGAGCTGCTGGTCCACGTGAAAGAAGGCTCCTACTCCCTGGGGACGGTGCCCCCCAGCCTGGATGAGGACCCCACGTTCCGCTGCGAAGCGTGTGACGAACTCTTCCCGTCCAAGCTGGACCTGTGGCGCCACAAGAAGTACGCGTGCAGCTCGGTGGGGGCCGTGCTCTACGAGGGCCTGGCCGACGAGCTCAAGCCCGAGGGCCTGGGCGGCGGGGGCAGCGACGGGCAGGCCCACGAGTGCAAAGACTGCGAGCGGATGTTCCCCACCAACTTGGAGCAGCACATGATCATCCACACAGAGGAGCGAGAGTACAAGTGTGACCAGTGTCCCAAGGCCTTCAACTGGAAGTCCAACCTCATCCGCCACCAGATGTCCCACGACAGTGGCAAGCGCTTCGAATGTGAAAACTGTGTGAAGGTGTTCACAGACCCCAGCAACCTGCAGCGGCACATCCGCTCCCAGCACGTGGGCGCCCGGGCCCACGCCTGCCCCGACTGCGGGAAGACGTTCGCCACGTCCTCGGGCCTCAAGCAGCACAAGCACATCCACAGCACCTCCTACACGCAGTTCTCCAACCTGTGCCGCCACAAGCGCATGCACGCCGACTGCCGCACGCAGATCAAGTGCAAGGACTGCGGGCAGATGTTCAGCACTACCTCTTCCCTCAACAAGCACCGGCGCTTCTGCGAGGGCAAGAACCATTACACGCCGGGCGGCATCTTCGCGCCGGGCCTGCCCCTGACCCCCAGCCCCATGATGGACAAGGCCAAGCCACACCCCAGCCTCAACCACGCCGGCCTGGGCTTCAACGAGTACTTCCCCTCCAGGCCGCACCCGGGGAGCCTGCCCTTCTCGGCGGCGCCCCCCGCCTTCCCCACGCTCACGCCCGGCTTCCCGGGCGTCTTCCCTCCGTCCCTGTACCCCCGGCCGCCCCTGCTACCTCCCATGCCGCTGCTCAAGAGCCCCCGGAACCACACGCAGGACACCAAGCTCCCCAGCCCCCTGGGCAACCCGGCCCTGCCCCTCGTCTCCGCCATCGGCAGCAGCGGGCAGGGCGCCGCGGCGGCCGCGGGGCCCGAGGAGAAGCCGGAGAGCCGCCTGGAGGACGCGTACGCCGCCAAGCTCAAGCCCCGGGGCAGCGACCTGTCAGACGGCAGCGACTTCGAGGATATCAACACCACAACCGGGACCGACCTGGACACGACCACGGGCACGGGCTCCGACCTGGACAGCGACGCTGACAGCGACCGCGACAAGGCCAAGGCCAAGGCCAAGGCGGCCGAGGGCAAGGCCGAGCTCGGGGGCGGCACAGTGGCCCCCGGCGCCCCCAACAGCGTGGGCGAGGTGCCCGCCTTCTACTCCCAGCACTTCTTCCCGCCGCCCGAGGAGCAGCTGCTGACAGCGTCGGTCGCCGCGGGCGACTCCATCAAGGCCATCGCGTCCATCGCCGAGAAGTACTTCGGGCCCGGCTTCATGGGCATGCAGGAGAAGAAGCTGGGCGCGCTGCCCTACCACTCCGTGTTCCCCTTTCAGTTCCTGCCCAACTTCCCCCACTCCCTGTACCCCTTCACAGACCGCGCCCTCGCGCACAGCCTGCTGGTCAAGGCCGAGCCAAAGTCGCCCCGGGACGCCCTCAAGGCCGGTGGCCCCAGCGCCGAGTCACCCTTCGACCTCACCACCAAACCCAAAGAGGCCAAGCCCGTCCTGCCGGCGTCCAAGGTGCCCCCGGCCCCGGCGTCCGGCGAGGAGCAGCCGCTGGACCTCAGCATCGGCAGCCGGGTGCGGGCCAGCCAGAACGGAGGGACCCGGGAGCCCCGCAAGAACCACGTGTACGGCGAGCGCAGGCTGGGGGCCGGCGAGGGGCCGCCCAAGGCGTGCCCGGCGCAGCTGCCCCAGCAGCCGTCCCTGCACTACGCCAGGCCGTCGCCCTTCTTCATGGACCCCATCTACAGGGTGGAGAAGCGGAAGGTGACCGACCCAGTGGGAGCCCTTAAGGAGAAGTACCTGCGGCCGTCCCCACTGCTCTTCCACCCCCAGATGTCAGCCATCGAGACCATGACTGAGAAGCTGGAGAGCTTCGCGGCCATGAAGGCGGAATCCGGCGGCTCCCTGCAGCCCCTCCCCCCCCACCCCTTCAACTTCCGGTCCCCGCCCCCGACGCTCTCGGACCCCATCCTCAGGAAGGGCAAGGAGCGCTACACGTGCAGGTACTGTGGCAAGATCTTCCCCCGGTCAGCAAACCTCACGAGACACCTGAGGACACACACCGGCGAGCAGCCGTACAGGTGTAAGTACTGCGACCGGTCCTTCAGCATCTCCTCCAACCTCCAGCGGCACGTCCGGAACATCCACAACAAGGAGAAGCCCTTCAAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAACCTGGACAGACACCTGAAGAAGCACGAGCACGAGCACGCGCCAGTGAGCCAGCATTCGGGGGTCCTCACGAACCACCTGGGGACCAGCACCTCCTCCCCCGCCTCCGAGTCGGACCACCATGCACTTTTAGATGAGAAGGAAGACTCCTATTTCTCAGAAATCAGAAACTTTATTGCCAACAGCGAGATGAACCAAGCAACAACGCGAACAGACAAACGGCCGGAAGTCCAGGACCTGGACGGTGCCCCCCAGTGCCCGGGCCTGGCCGGCGGGAAGCCGGAGGACGTGGAGGAGGACGAGGAGGAGGAGCTGGAGGACGACGACAGCCTGGCGGGGAGGTCGCAGGACGACACCGCGTCCCCCACCCCTGAGCCCCAGGGCGCCTACGCGGATGAGGACGAGGAGGTGCCGCCCGCCTCGCTGGCCGTGGGCTTCGACCACACCCGAAGGTGTGTTGAGGAGCACCCAGGAGGTCTGTTGGCTTTGGAGCCGATGCCGACTTTTGGGAAGGGGCTGGATCTCCGCAGAGCAGCTGAGGAAGCATTTGAAGTTAAAGATGTGCTTAATTCCACCTTAGATTCTGAGACTTTAAAACAGACCCTGTACAGGCAGGCTAAGAACCAGGCGTATGCAATGATGCTGTCCCTTTCCGAGGACGCTCCTCTCCACACCTCCTCCCAGAGTCCTCTGGATGCTTGGCTGAACATGGCGGGAGCCACGCCGGAGTCCGGAGCCTTCAACCCCATCAACCACCTCTGA

Related Sequences

bmy_16880T0 SequenceType object (3)

Length: 1071 aa      View alignments
>bmy_16880T0
IYYKVIKDIEPGEELLVHVKEGSYSLGTVPPSLDEDPTFRCEACDELFPSKLDLWRHKKYACSSVGAVLYEGLADELKPEGLGGGGSDGQAHECKDCERMFPTNLEQHMIIHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHYTPGGIFAPGLPLTPSPMMDKAKPHPSLNHAGLGFNEYFPSRPHPGSLPFSAAPPAFPTLTPGFPGVFPPSLYPRPPLLPPMPLLKSPRNHTQDTKLPSPLGNPALPLVSAIGSSGQGAAAAAGPEEKPESRLEDAYAAKLKPRGSDLSDGSDFEDINTTTGTDLDTTTGTGSDLDSDADSDRDKAKAKAKAAEGKAELGGGTVAPGAPNSVGEVPAFYSQHFFPPPEEQLLTASVAAGDSIKAIASIAEKYFGPGFMGMQEKKLGALPYHSVFPFQFLPNFPHSLYPFTDRALAHSLLVKAEPKSPRDALKAGGPSAESPFDLTTKPKEAKPVLPASKVPPAPASGEEQPLDLSIGSRVRASQNGGTREPRKNHVYGERRLGAGEGPPKACPAQLPQQPSLHYARPSPFFMDPIYRVEKRKVTDPVGALKEKYLRPSPLLFHPQMSAIETMTEKLESFAAMKAESGGSLQPLPPHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHEHAPVSQHSGVLTNHLGTSTSSPASESDHHALLDEKEDSYFSEIRNFIANSEMNQATTRTDKRPEVQDLDGAPQCPGLAGGKPEDVEEDEEEELEDDDSLAGRSQDDTASPTPEPQGAYADEDEEVPPASLAVGFDHTRRCVEEHPGGLLALEPMPTFGKGLDLRRAAEEAFEVKDVLNSTLDSETLKQTLYRQAKNQAYAMMLSLSEDAPLHTSSQSPLDAWLNMAGATPESGAFNPINHL*