Part of scaffold_1412 (Scaffold)

For more information consult the page for scaffold_1412 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RABGGTA ENSTTRG00000008635 (Bottlenosed dolphin)

Gene Details

Rab geranylgeranyltransferase, alpha subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008186, Bottlenosed dolphin)

Protein Percentage 95.36%
cDNA percentage 96.39%
Ka/Ks Ratio 0.41806 (Ka = 0.0284, Ks = 0.0679)

RABGGTA ENSBTAG00000018796 (Cow)

Gene Details

Geranylgeranyl transferase type-2 subunit alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025020, Cow)

Protein Percentage 93.06%
cDNA percentage 92.81%
Ka/Ks Ratio 0.18559 (Ka = 0.0397, Ks = 0.214)

RABGGTA  (Minke Whale)

Gene Details

Rab geranylgeranyltransferase, alpha subunit

External Links

Gene match (Identifier: BACU008677, Minke Whale)

Protein Percentage 90.29%
cDNA percentage 92.36%
Ka/Ks Ratio 0.49446 (Ka = 0.0673, Ks = 0.136)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1560 bp    Location:176232..181457   Strand:+
>bmy_16964
CACGGGCGCCTGAAGGTGAAGACATCAGAAGAGCAAGAGGAAGCCAAAAGGCTAGAGCGGGAACAGAAGCTGAAGCTATACCAGTCAGCCACCCGGACTCGCCAGGCTGGAGAGCTGGATGAATCAGTGCTGGAACTGACAAGCCAGATTCTGGGAGCCAACCCTGACTTTGCCACCCTCTGGAATTGTCGCCGAGAGGTGCTCCAGCGGCTGGAGGTCCAGAAGTCCCCCGAGGAGTTGGCCACTCTGGTGAAGGCAGAACTGGGCTTCCTGGAGAGCTGTCTGAGGGTGAACCCCAAGTCTTACGGTACCTGGCACCACCGCTGCTGGCTGCTGGGCCGCCTGCCAGAGCCCAACTGGGCCCGGGAGCTGGAGTTGTGTGCTCGCTTCCTCGAGGTTGATGAGCGGAACTTTCACTGCTGGGACTACCGGCGGTTTGTGGCTGCACAGGCAGCTGTGCCTCCTGCAGAGGAGCTAGCCTTCACTGACAGCCTCATCACCCGAAACTTCTCCAACTATTCCTCCTGGCATTACCGCTCCTGCCTCTTGCCCCAGCTGCATCCCCAGCCAGACTCTGGACCCCAGGGGCGCCTCCCTGAGGATGTGCTGCTCAAAGAGCTGGAGCTGGTGCAGAACGCCTTCTTCACTGACCCCAATGATCAGAGTGCCTGGTTCTACCATCGTTGGCTCCTGGGACGAGCGGATCCCCAGGATGCCCTGCGCTGCCTGCACGTGAGCCGGGATGAGGCCTGTCTGACTGTCTCCTTCTCCCGGCCCCTCCTAGTGGGCTCCAGGACGGAGACCTTGCTGCTCATGGTGGACGAGTCACCCCTGGCCGTGGCGTGGAGGACCCCAGATGGCAGGAACCGGCCTAGCCACGTCTGGCTCTGTGACCTGCCCGCCACCTCTCTCAACGACCAGTTGCCCCAACATACATTTCGTGTCATTTGGACAGCAGGCGATGCCCAGAAGGAGTGTGTGCTCTTAAAAGGCCGCCAAGAGGGCTGGTGCCGGGACTCCGCCACGGATGAACAGCTCTTTAGGGTGCCTGCTCACCATCATCTTGCTGATGCGGGCGCTGGACCCCCTGCAGCCGTGGACCCTATGCGGGCCGCGTACCTGGACGACCTGCGAAGCAAGTTCCTGCTGGAGAACAGCGTGCTCAAGATGGAGTACGCGGAGGTGCGCGTGCTGCACCTTGGTCACAAGGATCTGACGGTGCTCTGCCATCTGGAGCAGCTGCTCTTGATCACTCACCTCGACCTGTCGCACAATCGTCTCCGAGCCCTGCCCCCTGCCCTGGCTGCCCTGCGCTGCCTCGAGGTGCTGCAGGCCAATGACAACACTATCGAGTCCCTGGACGGTGTCACTAACCTGCCCCGGCTGCAGGAGCTCTTTCTGTGCAACAACCGCCTCCAGCAGCCTGCAGTGCTCCAGCCTCTTGCCTCCTGCCCCAGGCTGGTCCTCCTCAACCTGCAGGGCAACCCCCTGTGCCAAGCAGTGGGCATCTCGGAGCATCTGGCCGATCTGCTGCCTTCAGTTTGCAACAGCCTCACCTAA

Related Sequences

bmy_16964T0 Protein

Length: 520 aa      View alignments
>bmy_16964T0
HGRLKVKTSEEQEEAKRLEREQKLKLYQSATRTRQAGELDESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQDALRCLHVSRDEACLTVSFSRPLLVGSRTETLLLMVDESPLAVAWRTPDGRNRPSHVWLCDLPATSLNDQLPQHTFRVIWTAGDAQKECVLLKGRQEGWCRDSATDEQLFRVPAHHHLADAGAGPPAAVDPMRAAYLDDLRSKFLLENSVLKMEYAEVRVLHLGHKDLTVLCHLEQLLLITHLDLSHNRLRALPPALAALRCLEVLQANDNTIESLDGVTNLPRLQELFLCNNRLQQPAVLQPLASCPRLVLLNLQGNPLCQAVGISEHLADLLPSVCNSLT*