Part of scaffold_1412 (Scaffold)

For more information consult the page for scaffold_1412 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PSME1 ENSTTRG00000008620 (Bottlenosed dolphin)

Gene Details

proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008171, Bottlenosed dolphin)

Protein Percentage 85.78%
cDNA percentage 89.57%
Ka/Ks Ratio 0.85986 (Ka = 0.1083, Ks = 0.126)

PSME1 ENSBTAG00000021395 (Cow)

Gene Details

proteasome activator complex subunit 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000028520, Cow)

Protein Percentage 97.17%
cDNA percentage 94.97%
Ka/Ks Ratio 0.07159 (Ka = 0.0129, Ks = 0.1801)

PSME1  (Minke Whale)

Gene Details

proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)

External Links

Gene match (Identifier: BACU017420, Minke Whale)

Protein Percentage 66.33%
cDNA percentage 78.91%
Ka/Ks Ratio 0.54486 (Ka = 0.2226, Ks = 0.4085)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 714 bp    Location:297715..294912   Strand:-
>bmy_16976
ATGACCACGCTCAGGGTCCTGCCCGAAGCCCAAGCCAAGGTGGATGTGTTCCGTGAAGACCTATGTACTAAGACAGAGAACCTGCTCGGGAGCTATTTCCCCAAGAAGATTTCTGAGTTGGATGCATTTTTAAAGAAGGAAGACAAGGATGAAAAGAAGAAAGGGGAAGATGAAGACAAAGGTCCTCCTTGTGGCCCAGTGAACTGCAATGAGAAGATCGTGCTCCTCCTGCAGCGCCTGAAGCCTGAGATCAAGGATGTCATTGAGAAGCTGAACCTGGTCACCACCTGGTTGCAACTGCAGATACCTCGGATTGAGGATGGGAACAATTTTGGAGTGGCCGTCCAGGAGAAGGTGTTTGAGCTGATGACCACCCTTCACACCAAGCTGGAAGGCTTCCACACTCAAATCTCCAAGTATTTCTCTGAGCGAGGTGATGCTGTGACCAAAGCGGCTAAGCAGCCCCACGTGGTAGGTGAGGCCCAGGTCAGGGTGCATGGGAGGAGGGACACCTTTGAAGTCAGGSCTGACCCGAGTCTCCCACAGGGTGATTATCGGCAGCTGGTGCACGAACTGGATGAGGCAGAGTACCGGGATATCCGGCTGATGGTCATGGAGATCCGCAACGCTTACGCTGTGTTATATGAYATCATCCTGAAGAACTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAAGGAATGATCTATTGA

Related Sequences

bmy_16976T0 Protein

Length: 238 aa      View alignments
>bmy_16976T0
MTTLRVLPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKKEDKDEKKKGEDEDKGPPCGPVNCNEKIVLLLQRLKPEIKDVIEKLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTTLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVVGEAQVRVHGRRDTFEVRXDPSLPQGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRGETKGMIY*