Sequence detailsbmy_17028 (Coding sequence)

Part of scaffold_1439 (SequenceType object (1))

For more information consult the page for scaffold_1439 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMCR8ENSTTRG00000008164 (Bottlenosed dolphin)

Gene Details

Smith-Magenis syndrome chromosome region, candidate 8

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007727, Bottlenosed dolphin)

Protein Percentage 96.31%
cDNA percentage 96.1%
Ka/Ks Ratio 0.1126 (Ka = 0.0161, Ks = 0.1427)

SMCR8ENSBTAG00000017090 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000022723, Cow)

Protein Percentage 87.3%
cDNA percentage 87.44%
Ka/Ks Ratio 0.14624 (Ka = 0.0709, Ks = 0.4849)

SMCR8 (Minke Whale)

Gene Details

Smith-Magenis syndrome chromosome region, candidate 8

External Links

Gene match (Identifier: BACU019408, Minke Whale)

Protein Percentage 97.46%
cDNA percentage 98.05%
Ka/Ks Ratio 0.16676 (Ka = 0.0102, Ks = 0.061)

Additional orthologs identified in other species via the OPTIC pipeline.

SMCR8 (Human)   Smcr8 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2814 bp    Location:133619..141656   Strand:+
Raw sequence 
>bmy_17028
ATGATCAGCGCCCCTGACGTGGTGGCCTTCACCAAAGAGGACGAGTACGAGGAGGAGCCTTACAATGAGCCGGCCCTGCCCGAGGAGTACTCGGTGCCGCTCTTCCCCTTCGCCAGCCAAGGAGCCAGTCCGTGGTCCAAACTGTCCGGGGCCAAGTTCTCTCGGGACTTCATCCTTATTTCCGAGTTCTCTGAGCAGGTGGGACCCCAGCCCTTACTGACCATCCCCAATGACACCAAAGTTTTCGGTACTTTTGATCTCAATTACTTCTCTTTGCGGATCATGTCTGTGGATTACCAGGCCTCCTTCGTGGGCCATCCCCCTGGTTCTGCCTACCCCAAGCTGAACTTCGTGGAGGATTCCAAGGTCGTGCTGGGAGACTCCAAGGAGGGGGCCTTTGCCTACGTGCACCACCTCACCCTGTACGACCTGGAGGCCCGTGGCTTCGTGAGGCCCTTTTGTATGGCTTATATCTCAGCAGACCAGCACAAAATCATGCAGCAGTTCCAGGAGCTCTCAGCTGAATTTTCCAAAGCTTCAGAGTGCTTGAAAACAGGCAACAGGAAGGCATTTGCTGGGGAACTTGAAAAAAAACTGAAAGACTTGGATTACACCAGAACAGTGCTGCACACCGAGACGGAGATCCAGAAGAAAGCCAATGACAAAGGCTTTTACTCATCTCAGGCCATCGAGAAGGCCAATGAGCTGGCCAGTGTGGAGAAGTCCATCATCGAGCATCAAGACCTGCTGAGGCAGATCCGCTCGTACCCTCATCGGAAGTTGAGGGGGTCCGATTTGTGTCCTGGGGAGACGGAGCACACCCAGGATCCGCCCAGCCAGGCAGCCACTACCTCTGACCCCGAAGAGTCTGCTGACACAGACCATTACGCCTGCAGACCCGCCTACACCCCAAAACTCATCAAAGCAAAGTCCACCAAGTGTTTTGACAAGAAGCTGAAGACCTTGGAAGAGCTCTGCGACACCGAGTACTTCACCCAGACCCTGGCCCAGCTCAGCCACATTGAGCACATTTTCAGAGGAGACCTGTGCTACCTCCTGACCAGCCAGATCGACAGAGCACTCCTGAAGCAACAGCATATCACAAACTTCCTCTTTGAAGACTTGGTAGAGGTCGATGACAGGGGAGTAGAGAAACAGGAGAGCGCACCCCCTAGGCCCAGTCATGACAGGCCGCCTTCCAGGTCTGTGGAGGAATGTCCAGTTCCTCAAGTGTTAATTAGCGTGGGCTCCTACAAGTCCAGTGTGGAGTCCGTGCTAATCAAGATGGAGCAGGACCTTGGGGAGGAGGGGTCCAGGGAAGTGGAGGTGACAGAGCCAAGCAGTTTTGACCCCCAGGAGAACCTGGCCTACCTGGACACGGACATGAAAGGGAGCATCAGCAGCGGCGAGAGCATCGAGGTCCTCGGCACGGAGAAGTCCACCTCGGTGCTGTCGACCTCTGACAGCCAGGCCAGCCTCACGGTGCCCTCGAGCCCCCAAGTGGTCCGGAGCAAGGCTGTCAGCCACAGGACGATCAGCGGGGACAGTATTGAAGTCCTCAGCACCTGCCCCTCCGAGGCCCTCGTCCCCGACGACTTCAAGGCCAGTTACCCAAGTGCCATTAATGAAGAAGAGTCCTACGCAGATGACGGCGGGGGAGCCATCCACTTCCAGGCAGVCCTCAGCCCGCCGGAGCTGGGGGAGGCCGAGGAGGGCGGCTCTGGGGTCACCCCCTCACAGACAGACTCCTGCTGCATCGGGAGGGAGGGTGGCACTCTGCGGGTGCCGCTCTCCACCCCGGGCCACACGCTCTCCGACGAGGATGGGGTCGTGAGTGTCCCCCCACAGCGCTACCGGCAGAAGGACCAGGAGTTCCACGTGGACGTCTCAGTGGAAAACCCCAACGCCTCTTCCCGAGACAGCGGTTCCGAAGGCTTCCCTGCTTATGAGCTGGACCCGAGCCACCTGCTGGCCAGCCGGGACGGCAGTAAGACTAGCCTGGATGACCACTCCGACGCCACCAGCTACGGGAGCAGCGTCACCTCCGCCAGCTCCGACAGGACTCCCTCCTCTGTTCCTCCCACTGGCCCCTCTTCCGAGAGGCATAAGAAGAGGGCGGGCCAGAACGCCTTAAAATTCATCCGCCAGTACCCCTTTGCCCACCCAGCCATCTACTCCCTGCTCAGCGGGAGGACGCTCGTGATCCTAGGGGAGGAGGAGGCCGTAGTCAGGAAGCTTGTGAGCGCGCTGTCCATCTTCGTCCCCAACTACAGCCTCCATGCCAAACCCGTGAAGCACTGGGTCTCCTCTCCTTTGCATATCACGGATTTTCAGAAGTGGAAGCTTATTGGCCTGCAGAGGGTGGCATCCCCCGCCAGCGCTGGCACCCTCCACGCCCTGAGCCGCTACAGCCGCTACACGAGCATCCTGGACCTGGACCGGAAGACCCTGCGCTGCCCCCTCTACAGAGGCACCCTGGTGCCGCGGCTGGCGGACCACCGCACGCACATCAAGCGGGGCAGCACCTACTCCCTGCACGTGCAGAGCGTGCTCACGCAGCTGTGCGCCAAGGCCTTCCTCTACGCCTTCTGCCGCCACCTGCACCTGCCCGCCCGCGGCACGGACGCCGAGGGGCTGGCCGCCAGCCGCCGGGCCAGCTTCTTGCAGCTGAACCTGGGGCTGGTGAACGAAGACGTCAAGGTGGTCCAGTACCTGGCAGAGCTGCTGAAGCTGCACTACACGCGGGAGCCTTCCGCGGCCGCCCAGCCCGTGCTCAGGTTCGACTACGTCCCCAGTTTCCTATACAAGATCTGA

Related Sequences

bmy_17028T0 SequenceType object (3)

Length: 938 aa      View alignments
>bmy_17028T0
MISAPDVVAFTKEDEYEEEPYNEPALPEEYSVPLFPFASQGASPWSKLSGAKFSRDFILISEFSEQVGPQPLLTIPNDTKVFGTFDLNYFSLRIMSVDYQASFVGHPPGSAYPKLNFVEDSKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADQHKIMQQFQELSAEFSKASECLKTGNRKAFAGELEKKLKDLDYTRTVLHTETEIQKKANDKGFYSSQAIEKANELASVEKSIIEHQDLLRQIRSYPHRKLRGSDLCPGETEHTQDPPSQAATTSDPEESADTDHYACRPAYTPKLIKAKSTKCFDKKLKTLEELCDTEYFTQTLAQLSHIEHIFRGDLCYLLTSQIDRALLKQQHITNFLFEDLVEVDDRGVEKQESAPPRPSHDRPPSRSVEECPVPQVLISVGSYKSSVESVLIKMEQDLGEEGSREVEVTEPSSFDPQENLAYLDTDMKGSISSGESIEVLGTEKSTSVLSTSDSQASLTVPSSPQVVRSKAVSHRTISGDSIEVLSTCPSEALVPDDFKASYPSAINEEESYADDGGGAIHFQAXLSPPELGEAEEGGSGVTPSQTDSCCIGREGGTLRVPLSTPGHTLSDEDGVVSVPPQRYRQKDQEFHVDVSVENPNASSRDSGSEGFPAYELDPSHLLASRDGSKTSLDDHSDATSYGSSVTSASSDRTPSSVPPTGPSSERHKKRAGQNALKFIRQYPFAHPAIYSLLSGRTLVILGEEEAVVRKLVSALSIFVPNYSLHAKPVKHWVSSPLHITDFQKWKLIGLQRVASPASAGTLHALSRYSRYTSILDLDRKTLRCPLYRGTLVPRLADHRTHIKRGSTYSLHVQSVLTQLCAKAFLYAFCRHLHLPARGTDAEGLAASRRASFLQLNLGLVNEDVKVVQYLAELLKLHYTREPSAAAQPVLRFDYVPSFLYKI*