Sequence detailsbmy_17118 (Coding sequence)

Part of scaffold_1459 (SequenceType object (1))

For more information consult the page for scaffold_1459 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LFNGENSBTAG00000040361 (Cow)

Gene Details

Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000052963, Cow)

Protein Percentage 93.39%
cDNA percentage 91.71%
Ka/Ks Ratio 0.05187 (Ka = 0.0277, Ks = 0.534)

LFNG (Minke Whale)

Gene Details

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

External Links

Gene match (Identifier: BACU005500, Minke Whale)

Protein Percentage 98.96%
cDNA percentage 98.15%
Ka/Ks Ratio 0.03362 (Ka = 0.0041, Ks = 0.121)

Additional orthologs identified in other species via the OPTIC pipeline.

LFNG (Human)   Lfng (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1137 bp    Location:254273..263232   Strand:+
Raw sequence 
>bmy_17118
ATGCTCAAGCGCTGCGGCCGCCGCCTGCTGCTGGCGCTGGCGGGCGCGCTGCTCGCCTGCCTGCTGGTGCTCACCGCCGACCCGCCGCCGCCCCCGGTGCCCGCTGAGCGTGGTCGGCGCGCGCTGCGCAGCCTGGCGGGCCCCTCGGGGGCGGCCCCAGCTCCTGGGCTGGAGGCGGCGGCGGCACCCGGGGCGCTAGTCCGCGAGGTGCACAGTCTGTCCGAGTACTTCAGCCTGCTGACCCGCTCTCGTAGAGACGCGGGCCCACCGCCCGGCAGCGTCCCCCGCCCCGCAGACGGCCATCCGCGGCCCCCGGCCGAGCCACTCACGCCGCACGACGTCTTCATCGCGGTCAAGACCACCAAAAAGTTTCACCGCGCGCGCCTCGACTTGCTGCTGGAGACGTGGATCTCGCGCCACAAGGAGATGACGTACATTTTCACAGACGGGGAAGATGAAGCCCTGGCCAGGCGCATGGGCAACGTGGTCAATACTAACTGCTCGGCTGCCCACAGCCGCCAGGCGCTGTCCTGCAAGATGGCCGTGGAGTATGACCGCTTCATCGAATCGGGGAGGAAGTGGTTCTGCCATGTGGATGACGATAACTACGTGAACGTGCGGGCCTTGCTGCGGCTGCTGGCCAGCTACCCGCACACGCAGGATGTCTACCTCGGCAAGCCCAGCCTGGACAGGCCCATCCAGGCCACAGAGAGGGTCGGCGAGAGCAAGGTGCGTCCCGTCCACTTCTGGTTTGCCACCGGCGGGGCTGGCTTCTGCATCAGCCGAGGGCTGGCCCTGAAGATGAGCCCTTGGGCCAGCGGAGGCCACTTCATGAGCACGGCCGAGCGGATCCGGCTGCCGGACGACTGCACCATCGGCTACATCGTGGAGGCTCTGCTGGGCGTGCCCCTCATCCGCAGCGGGCTCTTCCACTCCCACCTGGAGAACCTGCAGCAGGTCCCCACCTCCGAGCTCCATGAGCAGGTGACCTTGAGCTACGGCATGTTTGAGAACAAGCGGAATGCTGTCCACATTAAGGGGCCCTTCTCAGTGGAGGCCGACCCGTCCAGGTTCCGCTCCATCCACTGCCACCTGTACCCGGACACACCCTGGTGTCCCCACACTGCCATCTTCTAG

Related Sequences

bmy_17118T0 SequenceType object (3)

Length: 379 aa      View alignments
>bmy_17118T0
MLKRCGRRLLLALAGALLACLLVLTADPPPPPVPAERGRRALRSLAGPSGAAPAPGLEAAAAPGALVREVHSLSEYFSLLTRSRRDAGPPPGSVPRPADGHPRPPAEPLTPHDVFIAVKTTKKFHRARLDLLLETWISRHKEMTYIFTDGEDEALARRMGNVVNTNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNVRALLRLLASYPHTQDVYLGKPSLDRPIQATERVGESKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHIKGPFSVEADPSRFRSIHCHLYPDTPWCPHTAIF*