Sequence detailsbmy_17169 (Coding sequence)

Part of scaffold_1464 (SequenceType object (1))

For more information consult the page for scaffold_1464 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SAP30ENSTTRG00000015652 (Bottlenosed dolphin)

Gene Details

Sin3A-associated protein, 30kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014826, Bottlenosed dolphin)

Protein Percentage 79.31%
cDNA percentage 84.37%
Ka/Ks Ratio 0.77597 (Ka = 0.1708, Ks = 0.2201)

SAP30ENSBTAG00000015578 (Cow)

Gene Details

histone deacetylase complex subunit SAP30

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020692, Cow)

Protein Percentage 80.92%
cDNA percentage 83.11%
Ka/Ks Ratio 0.36464 (Ka = 0.1529, Ks = 0.4194)

SAP30 (Minke Whale)

Gene Details

Sin3A-associated protein, 30kDa

External Links

Gene match (Identifier: BACU015233, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.72%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0213)

Additional orthologs identified in other species via the OPTIC pipeline.

SAP30 (Human)   Sap30 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 468 bp    Location:119290..104538   Strand:-
Raw sequence 
>bmy_17169
TGTCTGCGCGAGGACGGCGAGCGGTGCGGCCGGGCGGCGGGCAACGCCAGCTTCAGCAAGAGGATCCAGAAGAGCATCTCCCAGAAGAAGGTGAAGATCGAGCTGGATAAGAGCGCAAGGCATCTTTACATTTGTGATTATCATAAAAACTTAATTCAGAGCGTTCGAAACAGAAGAAAGAGAAAAGGGAGTGATGATGATGGAGGAGATTCACCTGTTCAAGATATTGATACYCCAGAGAAGTTTTATCTTCTAGAATCTAAATATGCATATCAGCGCCCCAGTTTAGTCTATTATACTTCTATTGGTAGTTGCAGTGCACAGAATGAAAAGGCAAGAAAGCAGATAGTTGGTTGCCACTTTAGGTCAATTCCAGTGAATGAAAAAGACACCTTAACATATTTCATCTACTCAGTGAAGAATGACAAGAACAAGTCAGATCTCAAGGTTGATAGTGGTGTTCACTAG

Related Sequences

bmy_17169T0 SequenceType object (3)

Length: 156 aa      View alignments
>bmy_17169T0
CLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEKFYLLESKYAYQRPSLVYYTSIGSCSAQNEKARKQIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH*