Sequence detailsbmy_17214 (Coding sequence)

Part of scaffold_1484 (SequenceType object (1))

For more information consult the page for scaffold_1484 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USB1ENSTTRG00000008429 (Bottlenosed dolphin)

Gene Details

U6 snRNA biogenesis 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007988, Bottlenosed dolphin)

Protein Percentage 24.67%
cDNA percentage 24.67%
Ka/Ks Ratio 0.14071 (Ka = 0.0121, Ks = 0.086)

C18H16orf57ENSBTAG00000015758 (Cow)

Gene Details

UPF0406 protein C16orf57 homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020923, Cow)

Protein Percentage 89.33%
cDNA percentage 90.22%
Ka/Ks Ratio 0.15772 (Ka = 0.0532, Ks = 0.3373)

Additional orthologs identified in other species via the OPTIC pipeline.

USB1 (Human)   Usb1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 453 bp    Location:184578..188139   Strand:+
Raw sequence 
>bmy_17214
ATGAGTGCGGCGCCCCTGGTGGGATACAGCAGCAGCGGCTCCGAGGATGAGGCTGAGGCCGGGGCCCGGGTCCGGCCGGGGACTGGAGGCTGCAGTCGGGGCCAGAGCCCCCTTCCCAGCCAGAAGTTGCCAGTACCTGACAGTGTGCTGGACATGTTCCCAGGCGCCGAGGAGAGGCTTGCAGATGATAGCGCAAAACATGGGGGCCGGGTGCGCACCTTTCCGCACGAGCGGGGCAACTGGGCCACCCACGTCTATGTACCATATGAAGCCAGGGAGGAGTTCCTGGACCTGCTTGACGTGCTGCTGCCCCACGCACAGACATACGTTTCCCGGCTGGTAAGGATGGAGGCCTTCCACCTCAGCCTGTCCCAGAGCGTGGTTCTGCGCCATCACTGGATCCTCCCCTTCGTGCAGGCTCTGAAAGACCGCGTGGCCTCCTTCCAGAGGTGA

Related Sequences

bmy_17214T0 SequenceType object (3)

Length: 151 aa      View alignments
>bmy_17214T0
MSAAPLVGYSSSGSEDEAEAGARVRPGTGGCSRGQSPLPSQKLPVPDSVLDMFPGAEERLADDSAKHGGRVRTFPHERGNWATHVYVPYEAREEFLDLLDVLLPHAQTYVSRLVRMEAFHLSLSQSVVLRHHWILPFVQALKDRVASFQR*