Part of scaffold_1473 (Scaffold)

For more information consult the page for scaffold_1473 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TDP1 ENSTTRG00000013580 (Bottlenosed dolphin)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012887, Bottlenosed dolphin)

Protein Percentage 91.89%
cDNA percentage 93.78%
Ka/Ks Ratio 0.44599 (Ka = 0.0491, Ks = 0.11)

TDP1 ENSBTAG00000013138 (Cow)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017463, Cow)

Protein Percentage 84.07%
cDNA percentage 86.83%
Ka/Ks Ratio 0.28242 (Ka = 0.0927, Ks = 0.3283)

TDP1  (Minke Whale)

Gene Details

tyrosyl-DNA phosphodiesterase 1

External Links

Gene match (Identifier: BACU011846, Minke Whale)

Protein Percentage 92.22%
cDNA percentage 94.34%
Ka/Ks Ratio 0.45337 (Ka = 0.046, Ks = 0.1015)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1524 bp    Location:415088..450486   Strand:+
>bmy_17226
ATGAAATTTCCACCTTTCATTTCCAGAGGAAGTATAATGTCTCAGGAAGGCAATTATGGGAGGTGGACGATATCCAGTAGTGATGAAAGTGAGGAGGAAAAGCCAAAACCGGACGAGCCATCTACCTCTTTTCTCCCGCACGCTGAGCAGGGAGCAGCCAGTGAGCCAAAGTACACCTGTTCCGAGGCTCGGAAAGCTGCCCACAGAAGGAAGATTGCACCCGTGAAATTCAGCAACACAGACTCCATTTCAGAAGCTTCACCTCCCAAAAGGCAGAAGGGCAGTTCCCAGGAAGACCTGGGCTGGCATCTCTCCAGCAGTGAGGATGAGCTGCCACCAGAGACGCAGCAGAAGCGGGCTAAGGACACGGGGATCAAAGAGGAGAAAGGCCTCCCTTCTCCCAGAGATGGTGCTGTCCCGGGAGCTGGGCACCACAGCCCCTCGGCCGGCCACGGGCTTGAAACGTCAGGGGAAGGCCAGGACATCTGGGACATGCTTGAAAAAGGGAACCCCTTCCAATTTTACCTCACTAGAGTCTCTGGAATTAAGCCAAAGTATAACTCTGGAGCCCTCCACATCAGGGATATTTTATCTCCTCTATTTGGGACACTTGTTTCTTCAGCTCAGTTTAACTACTGCTTTGATGTGGACTGGCTCGTAAAACAGTATCCACCAGAGTTCAGGTCAYAGCAGAGCTTCAGGCTCAGGCCACGGGGCTCCATTATAAAGGCAAAGTTGGATATTGCATTTGGAACACACCACACGAAAATGATGCTACTGCTGTATGAAGAAGGCCTCCGGGTTGTCATACACACCTCCAACCTCATTCACGCTGACTGGCACCAGAAGACACAAGGAATATGGTTGAGCCCCCTGTACCCACGAATAGTCCATGGGACCCACAGATCTGGAGAATCAACCACACACTTTAAAGCTGACCTCATCAGCTACTTGATGGCTTATAACGCCGCTCCCCTCAAGGAGTGGATAGATACCATCCAGGAGCACGACCTCTCAGAAACAAATGTTTACCTTATTGGCTCAACCCCGGGACGCTTTCAAGGAAATCAAAAAGATAACTGGGGACATTTTAGGCTTAGGAAGCTTCTGAAAGAGCATGCCTCATCCATACCTAAAGCAGAGTCCTGGCCTATAGTAGGTCAGTTCTCAAGCGTTGGCTCCATGGGGGCCGATGAATCAAAATGGTTGTGTTCTGAGTTTAAAGAGAGCTTGGTGACACCGGGCAAGGAAAGCAGGACCCCAGGAAGTGCTGTTCCTCTTCATCTGATCTATCCTTCAGTGGAAAACGTGCGAACCAGCTTAGAAGGATATCCAGCTGGGGGCTCTCTTCCCTATAGCATCCAGACGGCGGAGAAACAGAATTGGCTCCATTCCTATTTTCACAAATGGTCAGCCGACACGTCAGGCCGCAGCAATGCCATGCCACATATTAAGACATATATGAGACCCTCTCCAGACTTCAGTCAACTTGCGTGGTTCCTTGTCACAAGCTCATCTATCTAG

Related Sequences

bmy_17226T0 Protein

Length: 508 aa      View alignments
>bmy_17226T0
MKFPPFISRGSIMSQEGNYGRWTISSSDESEEEKPKPDEPSTSFLPHAEQGAASEPKYTCSEARKAAHRRKIAPVKFSNTDSISEASPPKRQKGSSQEDLGWHLSSSEDELPPETQQKRAKDTGIKEEKGLPSPRDGAVPGAGHHSPSAGHGLETSGEGQDIWDMLEKGNPFQFYLTRVSGIKPKYNSGALHIRDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRSXQSFRLRPRGSIIKAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIVHGTHRSGESTTHFKADLISYLMAYNAAPLKEWIDTIQEHDLSETNVYLIGSTPGRFQGNQKDNWGHFRLRKLLKEHASSIPKAESWPIVGQFSSVGSMGADESKWLCSEFKESLVTPGKESRTPGSAVPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKTYMRPSPDFSQLAWFLVTSSSI*