Sequence detailsbmy_17281 (Coding sequence)

Part of scaffold_1487 (SequenceType object (1))

For more information consult the page for scaffold_1487 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BLOC1S6ENSTTRG00000002329 (Bottlenosed dolphin)

Gene Details

biogenesis of lysosomal organelles complex-1, subunit 6, pallidin

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000002182, Bottlenosed dolphin)

Protein Percentage 86.63%
cDNA percentage 87.79%
Ka/Ks Ratio 0.42099 (Ka = 0.109, Ks = 0.259)

PLDNENSBTAG00000012250 (Cow)

Gene Details

pallidin

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000016245, Cow)

Protein Percentage 87.21%
cDNA percentage 87.98%
Ka/Ks Ratio 0.50349 (Ka = 0.1108, Ks = 0.22)

Additional orthologs identified in other species via the OPTIC pipeline.

BLOC1S6 (Human)   Bloc1s6 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 549 bp    Location:217364..228112   Strand:+
Raw sequence 
>bmy_17281
TGTGTGTGTGCTCTGAACTCCACTGCCAGCCTCCCTTCCTCCCTCCCTGCTACTTTCTTACCCCTGTGCCAATTTAAAAGCTTCCTAAATTTGATTTTTTGCTTGGGGACAGGTTTAAGTGACACTTCTCCAGATGAAGGGTTAATAGAGGACTTGACCATAGAAGACAAAGCTGTGGAGCAACTGGCAGAAGGCTTGCTTTCTCACTACTTGCCAGATCTGCAGAGATCAAAACAAGCTCTCCAGGAACTCACACAGAACCAAGTTGTATTATTAGACACACTGGAACAAGAGATTTCAAAATTTAAAGAATGTCATTCTATGTTGGATATTAATGCTTTGTTCACTGAAGCTAAACACTATCATGCCAAGTTGGTGAATATAAGAAAAGAGATGCTGATGCTTCATGAAAAGACATCAAAGTTAAAAAAAAGAGCACTTAAACTGCAGCAGAAGAGGCAAAAAGAAGAGCTGGAAAGGGAGCAGCAACGAGAGAAGGAATTTGAAAGAGAAAAGCAGTTAACTGCCAAACCAGCTAAAAGGACGTGA

Related Sequences

bmy_17281T0 SequenceType object (3)

Length: 183 aa      View alignments
>bmy_17281T0
CVCALNSTASLPSSLPATFLPLCQFKSFLNLIFCLGTGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFTEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTAKPAKRT*