Sequence detailsbmy_17317 (Coding sequence)

Part of scaffold_1519 (SequenceType object (1))

For more information consult the page for scaffold_1519 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HPS3ENSTTRG00000004684 (Bottlenosed dolphin)

Gene Details

Hermansky-Pudlak syndrome 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004417, Bottlenosed dolphin)

Protein Percentage 85.13%
cDNA percentage 85.39%
Ka/Ks Ratio 0.30143 (Ka = 0.0335, Ks = 0.111)

HPS3ENSBTAG00000002395 (Cow)

Gene Details

Hermansky-Pudlak syndrome 3 protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003112, Cow)

Protein Percentage 90.69%
cDNA percentage 91.26%
Ka/Ks Ratio 0.26604 (Ka = 0.0567, Ks = 0.2132)

HPS3 (Minke Whale)

Gene Details

Hermansky-Pudlak syndrome 3

External Links

Gene match (Identifier: BACU018934, Minke Whale)

Protein Percentage 90.26%
cDNA percentage 91.22%
Ka/Ks Ratio 0.47089 (Ka = 0.0766, Ks = 0.1627)

Additional orthologs identified in other species via the OPTIC pipeline.

HPS3 (Human)   Hps3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3240 bp    Location:125355..92174   Strand:-
Raw sequence 
>bmy_17317
ATGTCCGGGGAGAGAACAGGAGACTATTTGGTAGCAATTGAAGAGAAAAACAAAGCTACGTTTCTACGTGCTTATGTGAACTGGAGAAGTAAAAGGACTGAAAACTCCCGAGTGTGTATCCGAATGGTCGGACATGACGTGGAGGCACCCTTCAGTGAAACCTTCAGAGACCAGATGTCTATTGTGGAAATGCCGCTTTCTGAGGCTCCCCTGTGCATTTCCTGTTGCCCTGTGAAAGGAGACCTTCTTGTTGGCTGCACAAATAAGTTAGTTTTATTTAGTTTGAAGTATCAGATCGTTAGTGAAGAATTCTCAATATTGGACTTTGAACGTTCTTTAATTATCCATATAGATAATATCACCCCTGTTGAAATTTCTTTTTGTATTGGATATGTCGCTGTCATGTCAGACTTAGAAGTTTTAATCCTAAAACTGGAGTCAGACCCCAAAAATGGAGAAAGTGTTAACCACCATCCACGTAAGACCAACAATCCAGTGAAACTGTCAGAAGACATCAGTAATGAAACTTTGCAGCTTGAGTCAGATGATTTTGTTATCTGCCAAAAGCCCATGGAACTTCTTGGTGAAAAAAGCGAACAGTCTGGAGTATCTGTTACACTGGAGTCAACAGGATTAGCTGATGAAAAAATAAAATATTTCCACGTTCAGCACCTGCTCTATAGACGTTTTGCTCCTGATATTTCATCCTATGTCTTGTCGGATGACATCAAGTTGCATTCACTTCAGCTGCTACCCATTTACCAAACAGTCTACCAGTATCCTGAGAAGTCTCAGCAGGCGGTACTCACACCACAATTTTTGCATGTCATCACAAGTAACAACCTGCAGTGTTACACGGTACGGTGCAGTGCGGCGGCCGCTCGGGAGGAGGACCCGTATGTGGACACCACCCTGAAGGCTTGCCCACCTGTCAGTATGGATGTCTGTGCTTTAAGAATACAGCTTTTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACGTTATACTTCTGACCAAGGCAGACCCTGAAACAATTCCAGAGAGAAGAGAGTCACCCAAGAGGCTTCTTTCTAGAAAAGGTACCAGTGTTAATCTCAAAACACCTCCTGTAGCTGAGGCTGGGTGGAATTTGTATATTGTGAATACGATCTCACCAGTGCAACTGTACAAAGAAATGGTAGACTACAGTAACACCTACAAGACTGCAAAAACGCAGAGCTGCATCCACCTTCTCAGCGAGGCTCACCTGTTAGTGAGAGCTGCCCTGATGGATGCCAGTCAGCTGGAACCTGGAGAAAAAGCAGAACTTTTAGAAGCATTTAAAGAAAGCTGTGGGCACCTTGGAGACTGCTACAGCAGGCTTGACACCCAGTATTCCCACCTCGCCTTGCCATACTATAAGATGTCTGGTTTGTCTATGGCTGAAGTTTTGGCCCGAGTAGACTGGGAAGTAGAGGATGGATCGCAGAAATACGAGAGGGGATTAATCTTTTATATTAATCATTCACTTTATGAAAACCTGGATGAAGAATTAAGTGAAGAATTGGCTGCAAAAGTGGTTCAGATGTTTTATGTCGCTGAGCCGAAGCAACTGCCGCATATTCTCTGTAGTCCTTCTATGAAGAATATTGATCCTTTAACTGCCATAAGCTATTTAAGGAAGCTGGATACTTCTGGGTTTTCATCAGTCTTAGTGACATTGACCAAGGCAGCAATGGCTTTGAAAATGAGAGATCTTGACATGCACAGAAATGAAATGAAAAGCCATTCAGAGATGAAGTTGGTATGTGGCTTCATTCTGGAACCTCGGCTATTGATTCAACAGAGGAAAGGACAGATTGTTCCAACTGAATTTGCAGTTCACTTGAAGGAGACTCAGCCTGGATTGCTTGTGGCTTCAGTCCTTGGCTTACAGAAGAACAACAAAATTGGAATTGAAGAAGCAGATTCCTTCTTTAAGGTGCTTTGTGGTAAAGATGAAGATACGATTCCTCAGCTCTTAGTAGACTTTTGGGAAGCTCAGCTGGTAGCATGTCTCCCAGATGTGGTACTTCAGGAACTCTTTTTCAAGCTCACATCACAGTACATCTGGAGATTATCTAAGAGGCAGCCACCTGACACCACACCATTGAGAACATCAGAGGACCTGATAAACACCTGTAGTCATTATGGCTTAATCAGTCCATGGGTTAATGTCTTAATATCATCCGAATCCTTGGCTGATAAAAATTATATGGAAGACCTTTCAAAATTACAGTCTCTCATATGTGGTCCTTCATTTGACATAGCTTCCATTATTCCATTCTTGGAGCCACTCTCAGAAGACACTGTTGCTGGCCTCAGTGTCCATGTTCTGTGTCGTACGCGTTTGGAAGAGTATGAGCGGTGCATAGACAGGCTGTTAGAGAGATGCCCGGAGGCAACTTTGTGGTGGAAAAAACTGCTGCCTGAACTTTGTCAGAGAATAAAATGTGGTGGAGAGAAATATCAACTCTACTTATCATCACTAAAAGTCAGAGAAACTCACAGCCTCAGTATTTTAAAAATTGGAATAGCCATTAAAGTCCATTTTATATTAATGGAAATTAAAATTATTATCATTATTAATCATAATTGTAAGCAAGTACTGAGGAATGATAAATTTCTCAAAGATTTAGAAGTAAACACTGTCAATTGTTGCTGTGGAACTACAACTAAGGGATTTCTTAAATGTCCTCCCAGAAGATGGCACTGCAGCATTTTTCTTGCCATATCTTCTTTACTGCAGTCGAAAGAAATCATTGACTTGAAGAATGTAAAAAAGCTACAAGATATAGGAGTTTCCTCAAAGAAGGCATATATTTTTAAAGAAAAAGATTTCAAACTTTATTTTCTTGTTACTTTTAAAATTCATGCTAAGTTTCTCTCTGAATCAAATGAAATAGAAGTTTACAAAGCTGACTTTCTTCTTCCAAAGCCTTGTTTCCATTTTTTGTTGATGTGTACTCTTGCTCTTTTAGCCAGAGTGTATGTGAAAATAAAGAAATATAAAGAACTGTGTCTTTTTTTTAGCCTCTTATTAAATAATTTTGAGTCCCAGTTCAGTTCATTGACAGATTTCATTTATAGATTGTTTCTCAACTCTGCCTTTCTCCAGTTCCATATTAACTTCCTTTTGATCATCTCTTCGAGGGTTCACAAAACTCAGATTGGCAACATTTTATTTTATTTTAAAAATTTGTTTTATTTTATTTAA

Related Sequences

bmy_17317T0 SequenceType object (3)

Length: 1080 aa      View alignments
>bmy_17317T0
MSGERTGDYLVAIEEKNKATFLRAYVNWRSKRTENSRVCIRMVGHDVEAPFSETFRDQMSIVEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIVSEEFSILDFERSLIIHIDNITPVEISFCIGYVAVMSDLEVLILKLESDPKNGESVNHHPRKTNNPVKLSEDISNETLQLESDDFVICQKPMELLGEKSEQSGVSVTLESTGLADEKIKYFHVQHLLYRRFAPDISSYVLSDDIKLHSLQLLPIYQTVYQYPEKSQQAVLTPQFLHVITSNNLQCYTVRCSAAAAREEDPYVDTTLKACPPVSMDVCALRIQLFIGLKAICHFKNHVILLTKADPETIPERRESPKRLLSRKGTSVNLKTPPVAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTAKTQSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGDCYSRLDTQYSHLALPYYKMSGLSMAEVLARVDWEVEDGSQKYERGLIFYINHSLYENLDEELSEELAAKVVQMFYVAEPKQLPHILCSPSMKNIDPLTAISYLRKLDTSGFSSVLVTLTKAAMALKMRDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQRKGQIVPTEFAVHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCGKDEDTIPQLLVDFWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINTCSHYGLISPWVNVLISSESLADKNYMEDLSKLQSLICGPSFDIASIIPFLEPLSEDTVAGLSVHVLCRTRLEEYERCIDRLLERCPEATLWWKKLLPELCQRIKCGGEKYQLYLSSLKVRETHSLSILKIGIAIKVHFILMEIKIIIIINHNCKQVLRNDKFLKDLEVNTVNCCCGTTTKGFLKCPPRRWHCSIFLAISSLLQSKEIIDLKNVKKLQDIGVSSKKAYIFKEKDFKLYFLVTFKIHAKFLSESNEIEVYKADFLLPKPCFHFLLMCTLALLARVYVKIKKYKELCLFFSLLLNNFESQFSSLTDFIYRLFLNSAFLQFHINFLLIISSRVHKTQIGNILFYFKNLFYFI*