Part of scaffold_1517 (Scaffold)

For more information consult the page for scaffold_1517 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA6D ENSTTRG00000015676 (Bottlenosed dolphin)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014853, Bottlenosed dolphin)

Protein Percentage 80.73%
cDNA percentage 79.89%
Ka/Ks Ratio 0.08181 (Ka = 0.0058, Ks = 0.0714)

SEMA6D ENSBTAG00000016800 (Cow)

Gene Details

semaphorin-6D precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022349, Cow)

Protein Percentage 98.32%
cDNA percentage 95.07%
Ka/Ks Ratio 0.04419 (Ka = 0.0079, Ks = 0.1789)

SEMA6D  (Minke Whale)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D

External Links

Gene match (Identifier: BACU003227, Minke Whale)

Protein Percentage 99.61%
cDNA percentage 99.12%
Ka/Ks Ratio 0.06912 (Ka = 0.0018, Ks = 0.026)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3336 bp    Location:280215..267144   Strand:-
>bmy_17421
ATGAGGTTCTTCCTGCTTTGTGCCTACATGCTGCTTCTGATGATTTCCCAGTTGAGAGCAGTCAGCTTTCCTGAAGACGATGAACCCCTTAATACTGTTGACTATCACTATTCAAGGCAATATCCGGTTTTTAGAGGACGCCCTTCAGGCAATGAATCACAGCATAGGCTGGACTTYCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAGGGATCAAGTTTATACAGTAAACTTAAATGAAATCCCCAAAACAGAAGTAATACCAAACAAGAAACTGACATGGCGGTCAAGACAACAGGATCGAGAAAACTGTGCTATGAAAGGCAAGCATAAAGATGAATGCCACAACTTTATTAAAGTATTTGTTCCGAGAAACGATGAGATGGTGTTTGTTTGTGGCACCAATGCTTTTAATCCCATGTGTAGATACTATAGGTTGAATACCTTAGAGTATGATGGGGAAGAAATTAGTGGCTTGGCAAGGTGCCCATTTGATGCCAGACAAACCAATGTTGCCCTTTTCGCTGATGGGAAGCTGTATTCTGCCACAGTGGCTGACTTCTTGGCCAGTGATGCTGTYATTTATCGAAGCATGGGCGATGGATCTGCCCTTCGTACTATAAAATATGATTCGAAGTGGATCAAAGGAACCAGTTTGTTTTCAATTTCTCTTTCAGAGCCACACTTTCTTCATGCCATAGAATATGGAAACTATGTTTATTTCTTCTTTCGAGAAATTGCTGTAGAACATAATAATTTAGGCAAGGCAACATGTTTCATCCCTCCCTTATCTGGCAGCTTTTTGTTCCTCTTCTTCCTGCATGCTCATAACCCCGTTGCTTTGCTTTTGTCCCGTGGGCAGGCTGTATATTCCCGTGTGGCCCGCATATGTAAAAACGACATGGGTGGCTCCCAGCGGGTCCTGGAGAAACACTGGACTTCATTTCTGAAGGCTCGGCTTAACTGTTCTGTCCCCGGAGATTCATTTTTCTACTTTGATGTTCTGCAGTCTGTCACAGACATAATACAAATCAATGGCATCCCCACTGTGGTCGGGGTGTTTACCACACAGCTCAACAGCATTCCTGGGTCTGCAGTCTGTGCATTTAGCATGGATGACATTGAAAAAGTATTCAGAGGACGGTTTAAAGAACAGAAAACTCCAGATTCCGTTTGGACAGCAGTCCCTGAAGACAAAGTACCGAAGCCAAGGCCTGGCTGTTGTGCAAAGCATGGGCTTGCCGAAGCTTATAAAACCTCCATCGATTTCCCAGATGAAACCCTGTCGTTCATTAAATCCCACCCCCTGATGGACTCTGCCGTCCCACCCATTGCCGACGAGCCCTGGTTCACAAAGACTCGGATCAGGTACAGACTGACGGCCATTGCCGTTGACCATTCTGCTGGACCCCACCAGAACTACACAGTCATCTTTGTTGGCTCGGAAGCTGGCATGGTACTTAAAGTTTTGGCAAAGACCAGTCCTTTCTCTTTGAATGACAGTGTGTTACTGGAAGAGATTGAAGCGTACAACCATGCAAAGTGCAATGCTGAGAATGAGGAGGACAGAAAGGTCATCTCACTCCAGTTGGATAAAGATCATCATGCTTTATACGTGGCGTTCTCTAGCTGTGTTATCCGCATCCCCCTCAGTCGCTGTGAGCGTTATGGATCATGTAAAAAGTCTTGTATTGCATCTCGAGACCCGTACTGTGGCTGGTTAAGCCCAGGGGCCTGTGGTCAAGTGACCCCAGGGATGCTCGCTGGAGGATTTGAACAGGACACGGAATATGGCAACACAGCCCATCTAGGGGACTGCCATGAAATTTTGCCTACTTCAACTACACCAGATTACAAAATATTTGGCGGTCCAACATCTGACATGGAGGTATCTTCATCTTCTGTTACCACAATGGCAAGTATCCCAGAAATTACACCTAAAGTGATTGATACCTGGAGACCTAAACTGACCAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCTGATTTTACTGATCCTTTATCAGGTGTACGATGGGAAGTCCAATCTGGAGAGTCCAAYCAAATGGTCCACATGAATGTCCTCATCACCTGTGTCTTTGCAGCTTTTGTTTTGGGTGCATTCATTGCAGGTGTGGCAGTATACTGCTATCGTGACATGTTTGTTCGGAAAAACAGAAAGATCCATAAAGATGCAGAATCTGCCCAGTCGTGTACAGACTCCAGTGGAAGTTTTGCCAAGCTGAATGGTCTCTTTGACAGCCCAGTCAAGGAATATCAACAGAATATAGATTCTCCCAAATTGTATAGTAACCTGCTGACCAGTCGGAAAGAGCTGCCACCCAATGGAGATACGAAATCCATGGTCATGGACCATCGAGGCCAACCTCCCGAGCTGGCTGCTCTCCCGACACCTGAGTCTACACCTGTGCTTCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCAGACAAGGCCCACGGCCATGGGGCTTCAAGGAAAGAAACCCCCCAGTTTTTTCCTTCTAGTCCTCCACCCCATTCCCCACTAAGTCACGGACATATCCCCAGTGCCATTGTCCTTCCTAATGCTACCCATGACTACAACACATCTTTCTCAAACTCCAATGCTCACAAAGCTGAAAAGAAACTTCAAAACATTGACCACCCTCTTACAAAGTCATCCAGTAAAAGAGATCACCGGCGTTCTGTGGATTCCAGAAATACCCTCAACGATCTCCTGAAGCATCTAAATGACCCAAATAGTAACCCCAAAGCCATCATGGGAGACATCCAAATGGCCCACCAGACCCTAATGCTGGATCCCGTGGGACCTATGTCTGAGGTCCCGCCCAAGGTCCCTAACCGCGAGGCATCACTCTACTCTCCTCCCTCAACTCTCCCCAGAAATAGCCCAACCAAGCGAGTGGACGTCCCCACCACTCCCGGCGTCCCAATGACTTCTCTGGAAAGACAAAGGGGTTATCATAAAAATTCCTCCCAGAGGCACTCTATATCTGCTATGCCTAAAAACTTAAGTTCACCAAATGGTGTTTTGTTATCTAGACAGCCTAGTATGAACCGTGGAGGCTACATGCCCGCCCCCGCAGGGGCGAAGGTGGACTATATTCAGGGAACACCGGTGAGTGTTCATCTGCAGCCTTCCCTCTCCAGACAGAGCAGCTACACCAGTAACGGCACCCTTCCCAGGACGGGACTAAAGAGGACACCGTCCTTAAAACCTGACGTACCACCAAAGCCTTCATTTGTTCCCCAAACCACATCTGTCAGACCACTGAACAAATATACTTACTAG

Related Sequences

bmy_17421T0 Protein

Length: 1112 aa      View alignments
>bmy_17421T0
MRFFLLCAYMLLLMISQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEIPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLNTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKGTSLFSISLSEPHFLHAIEYGNYVYFFFREIAVEHNNLGKATCFIPPLSGSFLFLFFLHAHNPVALLLSRGQAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSVTDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFRGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRIRYRLTAIAVDHSAGPHQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCNAENEEDRKVISLQLDKDHHALYVAFSSCVIRIPLSRCERYGSCKKSCIASRDPYCGWLSPGACGQVTPGMLAGGFEQDTEYGNTAHLGDCHEILPTSTTPDYKIFGGPTSDMEVSSSSVTTMASIPEITPKVIDTWRPKLTSSRKFVVQDDPNTSDFTDPLSGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSDKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQTLMLDPVGPMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISAMPKNLSSPNGVLLSRQPSMNRGGYMPAPAGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTTSVRPLNKYTY*