Sequence detailsbmy_17453 (Coding sequence)

Part of scaffold_1503 (SequenceType object (1))

For more information consult the page for scaffold_1503 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

DDB1ENSTTRG00000011055 (Bottlenosed dolphin)

Gene Details

damage-specific DNA binding protein 1, 127kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010491, Bottlenosed dolphin)

Protein Percentage 85.87%
cDNA percentage 85.38%
Ka/Ks Ratio 0.2272 (Ka = 0.0153, Ks = 0.0675)

DDB1ENSBTAG00000021569 (Cow)

Gene Details

DNA damage-binding protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000028740, Cow)

Protein Percentage 98.57%
cDNA percentage 94.7%
Ka/Ks Ratio 0.05243 (Ka = 0.0113, Ks = 0.2158)

DDB1 (Minke Whale)

Gene Details

damage-specific DNA binding protein 1, 127kDa

External Links

Gene match (Identifier: BACU005401, Minke Whale)

Protein Percentage 98.93%
cDNA percentage 98.66%
Ka/Ks Ratio 0.34493 (Ka = 0.0093, Ks = 0.027)

Additional orthologs identified in other species via the OPTIC pipeline.

DDB1 (Human)   Ddb1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3531 bp    Location:97988..67339   Strand:-
Raw sequence 
>bmy_17453
CCGGCCGCTCTGGCCTGCAACGTGTCTCTGGGGCGGAGACAGGGGCAGTGGAGTTCGCCGTGCGCGGGTGGGGGCTCCCTGTCTGTTTGCTCGTGTCCGTCTATTTTTTTCGTTTCGCCTGAGTCCCGCTGGGCTGCCCCAGGCCTCGACATGTCGTACAACTACGTGGTAACGGCACAGAAGCCCACCGCCGTGAACGGCTGCGTGACCGGACACTTTACTTCAGCTGAAGACTTGAACCTGTTGATTGCCAAAAATACGAGATTAGAGATCTATGTGGTCACTGCTGAGGGGCTTCGGCCCGTCAAAGAGGTGGGCATGTATGGGAAGATTGCTGTCATGGAGCTTTTCAGGCCCAAGGGGGAGAGCAAGGACCTACTGTTTATCCTGACAGCTAAGTACAATGCCTGCATCTTGGAGTATAAGCAGAGTGGCGAGAGCATTGACATCATAACGCGAGCACATGGCAATGTCCAGGACCGAATTGGCCGCCCCTCAGAGACGGGCATTATTGGCATCATTGACCCCGAGTGCCGAATGATTGGCCTGCGACTCTATGATGGCCTTTTCAAGGTTATTCCACTAGACCGGGACAATAAAGAGCTCAAGGCCTTTAACATCCGTCTGGAGGAGTTGCATGTTATTGACGTCAAGTTCCTATATGGTTGCCAAGCACCTACCATCTGCTTTGTCTACCAGGACCCTCAGGGGCGGCACGTAAAAACCTATGAGGTGTCTCTCCGAGAGAAGGAGTTCAATAAGGGCCCTTGGAAACAAGAAAACGTAGAAGCTGAAGCTTCCATGGTGATTGCAGTCCCAGAGCCTTTTGGAGGCGCCATCATCATTGGACAGGAATCAATCACCTATCACAACGGTGACAAATATCTGGCGATTGCCCCTCCCATCATTAAGAGCTCAAATCAGCAAAGCACAATTGTGTGTCACAATCGCGTGGACCCCAATGGCTCCCGCTATCTGCTGGGAGACATGGAAGGACGGCTCTTCATGCTGCTTTTGGAGAAGGAGGAACAGATGGATGGCACCGTCACTCTCAAGGATCTCCGAGTGGAACTCCTTGGGGAGACCTCTATTGCTGAGTGTTTGACATACCTTGATAACGGCGTTGTGTTTGTCGGGTCTCGCCTTGGTGACTCCCAGCTTGTGAAGCTCAATGTTGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGACATGTGTGTGGTGGACCTGGAGAGGCAGGGGCAGGGACAGCTGGTCACTTGCTCTGGGGCTTTCAAGGAAGGCTCCTTGCGGATCATCCGGAATGGAATTGGAATCCACGAGCATGCCAGCATTGACTTGCCAGGCATCAAAGGCCTGTGGCCCCTGCGGTCTGATCCTAATCGGGAGACTGATGACACTTTGGTGCTCTCTTTTGTGGGCCAGACAAGAGTTCTCATGTTAAACGGAGAGGAAGTGGAAGAAACCGAACTGATGGGTTTTGTGGACGATCAGCAGACTTTCTTCTGTGGCAACGTGGCTCATCAACAACTCATCCAGATCACTTCAGCATCTGTGAGGTTGGTCTCTCAAGACCCCAAAGCTCTCGTCAGTGAGTGGAAGGAGCCTCAGGGCAAGAACATCAGTGTGGCCTCCTGCAATAGCAGCCAGGTAGTGGTAGCCGTGGGAAGGGCCCTCTACTACCTGCAGATCCATCCTCAGGAGCTCCGACAGATCAGCCACACAGAGATGGAACACGAAGTGGCCTGCTTGGACATCACCCCTTTAGGGGACAGCAATGGAATGTCCCCTCTTTGTGCTATTGGTCTCTGGACAGACATCTCAGCCCGAATCGCGAAGCTGCCCTCTTTTGAGCTACTGCACAAAGAGATGCTGGGTGGAGAGATCATTCCTCGTTCTATCCTGATGACCACCTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCGCTTTTCTACTTTGGGCTCAACATTGAGACAGGCCTGTTGAGCGACCGTAAGAAGGTGACTCTGGGCACCCAGCCCACYGTATTGAGGACTTTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGCCCCACTGTCATCTACAGCAGCAACCACAAATTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTACATGTGTCCCCTCAACTCAGATGGCTACCCTGACAGCCTGGCACTGGCCAACAACAGCACCCTCACCATTGGCACCATTGACGAGATCCAGAAGCTGCACATTCGTACAGTTCCCCTCTACGAATCTCCCAGCACCCGTTCTGCTTTTGAGAGGGGTGATGTGTGTTCTCTCTGTTCCCAGGCCCTGTCCAGCAGCGTCAGCTCCAGCAAGCTGTTCTCCAGCAGCACAGCCCCTCACGAGACCTCCTTTGGAGAAGAGGTGGAGGTGCATAACCTCCTTATCATTGACCAGCACACCTTTGAAGTGCTCCACGCCCACCAGTTCCTGCAGAACGAGTATGCCCTCAGCCTGGTCTCCTGCAGGTTGGGCAAAGACCCCAACACGTACTTCATCGTGGGCACGGCCATGGTGTACCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTTCAGTATTCAGATGGAAAACTACAGACTGTGGCTGAAAAGGAGGTGAAAGGGGCTGTGTACTCTATGGTGGAATTTAACGGGAAGTTGTTAGCCAGCATCAACAGCACGGTGCGGCTTTACGAGTGGACGACGGAGAAGGAGCTCCGCACCGAGTGCAACCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTGATGCGCTCGGTGCTGCTGCTGGCCTACAAGCCCATGGAGGGCAACTTCGAAGAGATTGCTCGAGACTTTAACCCCAACTGGATGAGTGCTGTGGAAATCCTGGATGATGACAATTTCCTGGGGGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGATAGCGCCGCCACCACTGACGAGGAGCGGCAGCACCTCCAGGAGGTTGGGCTCTTCCACTTGGGCGAATTTGTCAACGTCTTTTGCCACGGCTCTCTGGTCATGCAGAATCTGGGCGAGACCTCCACCCCTACACAGGGCTCGGTGCTCTTCGGCACGGTCAACGGCATGATTGGCCTGGTGACCTCACTGTCAGAGAGCTGGTACAACCTCTTGTTGGACATGCAGAATCGACTCAATAAAGTCATCAAAAGTGTGGGCAAGATTGAACACTCCTTATATCCTTCCCAGAGATCCTTTCATACTGAACGGAAGACAGAACCAGCCACAGGCTTCATCGATGGGGACTTGATTGAGAGTTTCCTGGACATCAGCCGGCCCAAGATGCAGGAGGTTGTGGCAAACCTGCAGTATGACGATGGCAGCGGAATGAAGCGAGAAGCCACCGCGGATGACCTGATCAAGGTTGTGGAGGAGTTAACTCGGATCCATTAG

Related Sequences

bmy_17453T0 SequenceType object (3)

Length: 1177 aa      View alignments
>bmy_17453T0
PAALACNVSLGRRQGQWSSPCAGGGSLSVCSCPSIFFVSPESRWAAPGLDMSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKSSNQQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQDPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPSTRSAFERGDVCSLCSQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCRLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPSQRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH*